Inactivation of the miR-183/96/182 Cluster Decreases the Severity of Pseudomonas aeruginosa-Induced Keratitis
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE
Authors: Muraleedharan, Chithra K.; McClellan, Sharon A.; Barrett, Ronald P.; Li, Cui; Montenegro, Daniel; Carion, Thomas; Berger, Elizabeth; Hazlett, Linda D.; Xu, Shunbin
Abstract
PURPOSE. The microRNA-183/96/182 cluster (miR-183/96/182) plays important roles in sensory organs. Because the cornea is replete with sensory innervation, we hypothesized that miR-183/96/182 modulates the corneal response to bacterial infection through regulation of neuroimmune interactions. METHODS. Eight-week-old miR-183/96/182 knockout (ko) mice and their wild-type littermates (wt) were used. The central cornea of anesthetized mice was scarred and infected with Pseudomonas aeruginosa (PA), strain 19660. Corneal disease was graded at 1, 3, and 5 days postinfection (dpi). Corneal RNA was harvested for quantitative RT-PCR. Polymorphonuclear neutrophils (PMN) were enumerated by myeloperoxidase assays; the number of viable bacteria was determined by plate counts, and ELISA assays were performed to determine cytokine protein levels. A macrophage (M phi) cell line and elicited peritoneal PMN were used for in vitro functional assays. RESULTS. MicroRNA-183/96/182 is expressed in the cornea, and in M phi and PMN of both mice and humans. Inactivation of miR-183/96/182 resulted in decreased corneal nerve density compared with wt mice. Overexpression of miR-183/96/182 in M phi decreased, whereas knockdown or inactivation of miR-183/96/182 in M phi and PMN increased their capacity for phagocytosis and intracellular killing of PA. In PA-infected corneas, ko mice showed decreased proinflammatory neuropeptides such as substance P and chemoattractant molecules, MIP-2, MCP1, and ICAM1; decreased number of PMN at 1 and 5 dpi; increased viable bacterial load at 1 dpi, but decreased at 5 dpi; and markedly decreased corneal disease. CONCLUSIONS. MicroRNA-183/96/182 modulates the corneal response to bacterial infection through its regulation of corneal innervation and innate immunity.
Identification of key potential targets for TNF-alpha/TNFR1-related intervertebral disc degeneration by bioinformatics analysis
CONNECTIVE TISSUE RESEARCH
Authors: Hong, Junmin; Yan, Jiansen; Chen, Jiancong; Li, Shuangxing; Huang, Yingjie; Huang, Zhengqi; Chen, Weijian; Liang, Anjing; Ye, Wei
Abstract
Background: Bioinformatics analysis was performed on gene expression profile microarray data to identify the key genes activated through the TNF-alpha/TNFR1 signaling pathway in intervertebral disc degeneration (IDD). The common differentially expressed genes (co-DEGs) were calculated in nucleus pulposus (NP) cells and annulus fibrosus (AF) cells under TNF-alpha treatment or TNFR1 knockdown, which reveals the potential mechanism of TNF-alpha involvement in IDD and may provide new therapeutic targets for IDD. Methods: Differentially expressed genes (DEGs) in TNF-alpha-treated or TNFR1-knockdown NP cells and AF cells were identified. Further analysis of the gene ontology (GO), signaling pathways and interaction networks of the DEGs or co-DEGs were conducted using the Database for Annotation, Visualization and Integrated Discovery, STRING Database, and Cytoscape software. The relationship between genes and musculoskeletal diseases, including IDD, was assessed with the Comparative Toxicogenomics Database. The predicted microRNAs corresponding to the co-DEGs were also identified by microRNA Data Integration Portal. Results: In NP cells, the DEGs (|log(2)FoldChange|>2, adj.P < 0.01) were identified including 48 DEGs by TNF-alpha treatment and 74 DEGs by TNFR1 knockdown; in AF cells, correspondingly, 105 DEGs were identified. The co-DEGs between NP cells and AF cells were calculated including CXCL8, ICAM1, BIRC3, RELB, NFKBIA, and TNFAIP3. They may be the hub genes that were significantly associated with both NP cells and AF cells through the TNF-alpha/TNFR1 signaling pathway. The co-DEGs and corresponding predicted miRNAs may be potential therapeutic targets for IDD. Conclusions: CXCL8, ICAM1, BIRC3, RELB, NFKBIA, and TNFAIP3 may have a synergistic effect on TNF-alpha-induced IDD development.