Polymorphisms of the Gene Encoding Kit Ligand are Associated With Bronchopulmonary Dysplasia
PEDIATRIC PULMONOLOGY
Authors: Huusko, Johanna M.; Mahlman, Mari; Karjalainen, Minna K.; Kaukola, Tuula; Haataja, Ritva; Marttila, Riitta; Toldi, Gergely; Szabo, Miklos; Kingsmore, Stephen F.; Ramet, Mika; Lavoie, Pascal M.; Hallman, Mikko
Abstract
Bronchopulmonary dysplasia (BPD) is a chronic inflammatory lung disease that affects infants born preterm. Family studies indicate that BPD has a significant genetic component. Rationale: We assessed the gene encoding Kit ligand (KITLG) as a candidate for genetic predisposition to moderate-to-severe BPD (controls were infants with no or mild BPD). Study design: Eight KITLG-tagging single nucleotide polymorphisms (SNPs) were analyzed in cohorts of very preterm infants originating from northern Finland (56 cases and 197 controls), southern Finland (n=59+52), and Canada (n=58+68). Additional replication populations included infants born in Finland (n=41+241) and Hungary (n=29+40). All infants were of European origin. Results were controlled for risk factors of BPD. Kit ligand concentration in umbilical cord blood, collected from very preterm infants (n=120), was studied. Results: Six SNPs of KITLG and a haplotype including all eight genotyped SNPs were associated with moderate-to-severe BPD in the northern Finnish population. When all the populations were combined, SNP rs11104948 was significantly associated with BPD. Kit ligand concentration in umbilical cord blood of infants born very preterm was an independent risk factor of BPD. Conclusions: We show that KITLG polymorphisms are associated with susceptibility to moderate-to-severe BPD. In addition, higher Kit ligand concentrations were observed in infants that subsequently developed BPD. These results support the possibility that KITLG gene is involved in predisposition to BPD. Pediatr Pulmonol. 2015; 50:260-270. (c) 2014 Wiley Periodicals, Inc.
Genomic-based identification of novel potential biomarkers and molecular signaling networks in response to diesel exhaust particles in human middle ear epithelial cells
MOLECULAR & CELLULAR TOXICOLOGY
Authors: Kwon, Jee Young; Park, Moo Kyun; Seo, Young Rok; Song, Jae-Jun
Abstract
Otitis media (OM) is the most common inflammatory disease of the middle ear cavity. Several factors including viral and bacterial infection, biofilm formation, congenital anomalies, and environmental factors have been recognized as the main causes of OM. Recent epidemiological studies showed that children living in areas with high concentrations of air pollutant including particulate matter and SO2 have significantly higher rates of OM compared with those in the control area. Another study reported that air pollutant exposure results in significant increases in pediatric OM. A large cohort study in Germany suggested that the prevalence of OM is related to air quality. Diesel exhaust particles (DEPs) are among the major toxic air pollutants of motor vehicle emissions. Hence, identifying the biomarkers of a signaling network for air pollutant (particularly DEPs)-mediated inflammatory responses would be meaningful. In this study, we identified novel biomarkers and potential molecular signaling networks induced by DEPs in human middle ear epithelial cells (HMEECs). Genomic expression analysis via microarray was used to discover novel biomarkers. A total of 254 genes were differentially expressed in DEPs-exposed HMEECs; 86 genes and 168 genes were up-and down-regulated, respectively. To verify reliable biomarkers and define meaningful signaling networks in the entire genome profiling, the in silico approach was applied. Based on genomic profiling analysis, we found several novel key molecular biomarkers, including SRC, MUC5AC, MUC2, MMP14, EIF1AK3, KITLG, NOD1, and TP53. Our findings suggested novel biomarkers for DEPs-responsive genes in HMEECs. Furthermore, we provided scientific evidence for the establishment of novel molecular signaling pathway associated with DEPs exposure in HMEECs.