Essential elements regulating HDAC8 inhibition: a classification based structural analysis and enzyme-inhibitor interaction study of hydroxamate based HDAC8 inhibitors
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
Authors: Banerjee, Suvankar; Amin, Sk Abdul; Adhikari, Nilanjan; Jha, Tarun
Abstract
Histone deacetylase 8 (HDAC8) expressions are correlated with a variety of cancer and tumor conditions. For the pathophysiological contributions of HDAC8, it is classified as an important target for cancer research. The hydroxamate derivatives are identified as more efficient HDAC8 inhibitors. However, strong chelating properties of hydroxamate group with the catalytic zinc ion of HDAC8 resulted in some demerits. Hence, in this current study, classification based chemoinformatic approaches including Bayesian modeling and recursive partitioning studies were conducted on a large and diverse set of 607 hydroxamates having less, very poor to high HDAC8 inhibitory properties. The main motto of this study is to identify and analyze the pivotal structural features of the cap and linker moieties required to obtain better HDAC8 inhibition. Moreover, a scrutiny of the HDAC8 crystal structure bound inhibitors was performed to correlate enzyme-inhibitor interactions with important molecular features resulted from these two classification-based models. The approach may be used to design novel HDAC8 inhibitors. Communicated by Ramaswamy Sarma
Hsp90 regulates HDAC3-dependent gene transcription while HDAC3 regulates the functions of Hsp90
CELLULAR SIGNALLING
Authors: Kotwal, Akhil; Subbarao, Sreedhar Amere
Abstract
Deregulated DNA methylation and post-translational histone modifications are majorly associated with cancer progression. Histone modification regulates the gene expression patterns that contribute to the emergence of sporadic cancers. Histone deacetylases (HDACs) act as erasers of acetylation marks, and their functions are often deregulated in cancer. Since non-histone proteins can also act as substrates for HDACs, identifying their involvement in vital regulatory molecules contributing to cancer progression is essential. Hsp90 is a cancer chaperone that contributes to kinase evolution and, thus, cellular adaptations. Acetylated Hsp90 loses its chaperoning functions and client protein interactions. Robust cell proliferation is one of the hallmarks of cancer. However, Hsp90 involvement in cancer promoting gene transcription is less understood. Using human breast cancer cells, we demonstrate that nuclear Hsp90 functions are regulated by HDAC3, while Hsp90 regulates HDAC3 nuclear translocation. Pharmacological inhibition of Hsp90 decreased the HDAC3 nuclear translocation and increased the gene expression relevant to epithelial to mesenchymal transition. Further, inhibition of HDAC3 resulted in the nuclear accumulation of acetylated Hsp90. Additionally, Hsp90 inhibition affected the global histone acetylation and methylation patterns, whereas HDAC3 inhibition exhibited less impact. Our results display a novel regulatory mechanism mediated by Hsp90 and HDAC3 in tumor cells. Considering that Hsp90 and histone deacetylase inhibitors are emerging as novel anticancer agents, our findings may have clinical relevance.