Evaluation of competing risks prediction models using polytomous discrimination index
CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE
Authors: Ding, Maomao; Ning, Jing; Li, Ruosha
Abstract
For competing risks data, it is often important to predict a patient's outcome status at a clinically meaningful time point after incorporating the informative censoring due to competing risks. This can be done by adopting a regression model that relates the cumulative incidence probabilities to a set of covariates. To assess the performance of the resulting prediction tool, we propose an estimator of the polytomous discrimination index applicable to competing risks data, which can quantify a prognostic model's ability to discriminate among subjects from different outcome groups. The proposed estimator allows the prediction model to be subject to model misspecification and enjoys desirable asymptotic properties. We also develop an efficient computation algorithm that features a computational complexity of O(nlogn). A perturbation resampling scheme is developed to achieve consistent variance estimation. Numerical results suggest that the estimator performs well under realistic sample sizes. We apply the proposed methods to a study of monoclonal gammopathy of undetermined significance.
Prevention by Dietary Polyphenols (Resveratrol, Quercetin, Apigenin) Against 7-Ketocholesterol-Induced Oxiapoptophagy in Neuronal N2a Cells: Potential Interest for the Treatment of Neurodegenerative and Age-Related Diseases
CELLS
Authors: Yammine, Aline; Zarrouk, Amira; Nury, Thomas; Vejux, Anne; Latruffe, Norbert; Vervandier-Fasseur, Dominique; Samadi, Mohammad; Mackrill, John J.; Greige-Gerges, Helene; Auezova, Lizette; Lizard, Gerard
Abstract
The Mediterranean diet is associated with health benefits due to bioactive compounds such as polyphenols. The biological activities of three polyphenols (quercetin (QCT), resveratrol (RSV), apigenin (API)) were evaluated in mouse neuronal N2a cells in the presence of 7-ketocholesterol (7KC), a major cholesterol oxidation product increased in patients with age-related diseases, including neurodegenerative disorders. In N2a cells, 7KC (50 mu M; 48 h) induces cytotoxic effects characterized by an induction of cell death. When associated with RSV, QCT and API (3.125; 6.25 mu M), 7KC-induced toxicity was reduced. The ability of QCT, RSV and API to prevent 7KC-induced oxidative stress was characterized by a decrease in reactive oxygen species (ROS) production in whole cells and at the mitochondrial level; by an attenuation of the increase in the level and activity of catalase; by attenuating the decrease in the expression, level and activity of glutathione peroxidase 1 (GPx1); by normalizing the expression, level and activity of superoxide dismutases 1 and 2 (SOD1, SOD2); and by reducing the decrease in the expression of nuclear erythroid 2-like factor 2 (Nrf2) which regulates antioxidant genes. QCT, RSV and API also prevented mitochondrial dysfunction in 7KC-treated cells by counteracting the loss of mitochondrial membrane potential (psi Delta m) and attenuating the decreased gene expression and/or protein level of AMP-activated protein kinase alpha (AMPK alpha), sirtuin 1 (SIRT1) and peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PGC-1 alpha) implicated in mitochondrial biogenesis. At the peroxisomal level, QCT, RSV and API prevented the impact of 7KC by counteracting the decrease in ATP binding cassette subfamily D member (ABCD)3 (a peroxisomal mass marker) at the protein and mRNA levels, as well as the decreased expresssion of genes associated with peroxisomal biogenesis (Pex13, Pex14) and peroxisomal beta-oxidation (Abcd1, Acox1, Mfp2, Thiolase A). The 7KC-induced decrease in ABCD1 and multifunctional enzyme type 2 (MFP2), two proteins involved in peroxisomal beta-oxidation, was also attenuated by RSV, QCT and API. 7KC-induced cell death, which has characteristics of apoptosis (cells with fragmented and/or condensed nuclei; cleaved caspase-3; Poly(ADP-ribose) polymerase (PARP) fragmentation) and autophagy (cells with monodansyl cadaverine positive vacuoles; activation of microtubule associated protein 1 light chain 3-I (LC3-I) to LC3-II, was also strongly attenuated by RSV, QCT and API. Thus, in N2a cells, 7KC induces a mode of cell death by oxiapoptophagy, including criteria of OXIdative stress, APOPTOsis and autoPHAGY, associated with mitochondrial and peroxisomal dysfunction, which is counteracted by RSV, QCT, and API reinforcing the interest for these polyphenols in prevention of diseases associated with increased 7KC levels.