Genetic diversity, population structure and runs of homozygosity in Ethiopian short fat-tailed and Awassi sheep breeds using genome-wide 50k SNP markers
LIVESTOCK SCIENCE
Authors: Getachew, T.; Haile, A.; Meszaros, G.; Rischkowsky, B.; Huson, H. J.; Gizaw, S.; Wurzinger, M.; Mwai, A. O.; Soelkner, J.
Abstract
Improved Awassi sheep from Israel has been used for the improvement of the productivity of Ethiopian short-fat tailed Menz and Wollo sheep breeds through crossbreeding. High density (similar to 50,000) single nucleotide polymorphism (SNP) markers distributed along the ovine genome were analyzed for Menz (n = = 34), Wollo (n = =18), local Awassi (n = = 24) and improved Awassi (n = = 23) sheep breeds to assess genetic diversity and population structure. Proportion of polymorphism was highest for local Awassi (96.2%) followed by the Ethiopian breeds (91.7 to 93.0%). Lowest proportion of polymorphic SNP was found in improved Awassi (84.3%). Expected heterozygosity was high (0.37) for local Awassi followed by the local Ethiopian breeds (0.35 and 0.36) and the improved Awassi (0.35). Highest genetic differentiation measured as fixation index (FsT) appeared between local Ethiopian breeds and improved Awassi (F-ST similar to 0.14) while the two Ethiopian breeds were closely related (F-ST = 0.004). Surprisingly, local Awassi sheep differentiated from improved Awassi at a higher level (F-ST = 0.09) than it differentiated from Wollo (F-ST = 0.058) and Menz (F-ST = 0.065). Principal component, model based structure and neighbor net analysis revealed clustering of populations according to their geographic location and breed development history. Strong selection pressure on the Awassi sheep resulted in significant differentiation from local Awassi, less within population variation, excess monomorphic loci and high level of runs of homozygosity (ROH) based genomic inbreeding. The high level of differentiation between local Ethiopian and improved Awassi supported the use of improved Awassi sheep to improve Menz and Wollo sheep breeds. However, importation of Awassi sheep and mating should consider strategies of controlling the level of inbreeding.
GC-MS Phytochemical Profiling, Pharmacological Properties, and In Silico Studies ofChukrasia velutinaLeaves: A Novel Source for Bioactive Agents
MOLECULES
Authors: Jahan, Israt; Tona, Marzia Rahman; Sharmin, Sanjida; Sayeed, Mohammed Aktar; Tania, Fatamatuz Zuhura; Paul, Arkajyoti; Chy, Md Nazim Uddin; Rakib, Ahmed; Bin Emran, Talha; Simal-Gandara, Jesus
Abstract
Chukrasia velutinais a local medicinal plant commonly known as chikrassy in Bangladesh, India, China, and other South Asian countries. The leaves, bark, and seeds are vastly used as herbal medicine for fever and diarrhea, and its leaves essential oils are used for antimicrobial purposes. In this study, we discuss the neuropsychiatric properties ofC. velutinaleaves through several animal models, quantitative and qualitative phytochemical analysis, and computational approaches. Neuropsychiatric effects were performed in rodents on the methanolic extract ofC. velutinaleaves (MECVL). Antidepressant, anxiolytic, and sedative effects experimented through these rodent models were used such as the force swimming test (FST), tail suspension test (TST), hole board test (HBT), elevated plus maze test (EPMT), light/dark box test (LDBT), open field test (OFT), and hole cross test (HCT). In these rodent models, 200 and 400 mg/kg doses were used which exhibited a significant result in the force swimming and tail suspension test (p< 0.001) for the antidepressant effect. In the anxiolytic study, the results were significant in the hole board, elevated plus maze, and light/dark box test (p< 0.001) for doses of 200 and 400 mg/kg. The result was also significant in the open field and hole cross test (p< 0.001) for sedative action in the sake of similar doses. Moreover, qualitative and quantitative studies were also performed through phytochemical screening and GC-MS analysis, and fifty-seven phytochemical compounds were found. These compounds were analyzed for pharmacokinetics properties using the SwissADME tool and from them, thirty-five compounds were considered for the molecular docking analysis. These phytoconstituents were docking against the human serotonin receptor, potassium channel receptor, and crystal structure of human beta-receptor, where eight of the compounds showed a good binding affinity towards the respective receptors considered to the reference standard drugs. After all of these analyses, it can be said that the secondary metabolite ofC. velutinaleaves (MECVL) could be a good source for inhibiting the neuropsychiatric disorders which were found on animal models as well as in computational studies.