Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians
NATURE GENETICS
Authors: Kato, Norihiro; Takeuchi, Fumihiko; Tabara, Yasuharu; Kelly, Tanika N.; Go, Min Jin; Sim, Xueling; Tay, Wan Ting; Chen, Chien-Hsiun; Zhang, Yi; Yamamoto, Ken; Katsuya, Tomohiro; Yokota, Mitsuhiro; Kim, Young Jin; Ong, Rick Twee Hee; Nabika, Toru; Gu, Dongfeng; Chang, Li-Ching; Kokubo, Yoshihiro; Huang, Wei; Ohnaka, Keizo; Yamori, Yukio; Nakashima, Eitaro; Jaquish, Cashell E.; Lee, Jong-Young; Seielstad, Mark; Isono, Masato; Hixson, James E.; Chen, Yuan-Tsong; Miki, Tetsuro; Zhou, Xueya; Sugiyama, Takao; Jeon, Jae-Pil; Liu, Jian Jun; Takayanagi, Ryoichi; Kim, Sung Soo; Aung, Tin; Sung, Yun Ju; Zhang, Xuegong; Wong, Tien Yin; Han, Bok-Ghee; Kobayashi, Shotai; Ogihara, Toshio; Zhu, Dingliang; Iwai, Naoharu; Wu, Jer-Yuarn; Teo, Yik Ying; Tai, E. Shyong; Cho, Yoon Shin; He, Jiang
Abstract
We conducted a meta-analysis of genome-wide association studies of systolic (SBP) and diastolic (DBP) blood pressure in 19,608 subjects of east Asian ancestry from the AGEN-BP consortium followed up with de novo genotyping (n = 10,518) and further replication (n = 20,247) in east Asian samples. We identified genome-wide significant (P < 5 x 10(-8)) associations with SBP or DBP, which included variants at four new loci (ST7L-CAPZA1, FIGN-GRB14, ENPEP and NPR3) and a newly discovered variant near TBX3. Among the five newly discovered variants, we obtained significant replication in the independent samples for all of these loci except NPR3. We also confirmed seven loci previously identified in populations of European descent. Moreover, at 12q24.13 near ALDH2, we observed strong association signals (P = 7.9 x 10(-31) and P = 1.3 x 10(-35) for SBP and DBP, respectively) with ethnic specificity. These findings provide new insights into blood pressure regulation and potential targets for intervention.
Gene expression profiling of MYC-driven tumor signatures in porcine liver stem cells by transcriptome sequencing
WORLD JOURNAL OF GASTROENTEROLOGY
Authors: Aravalli, Rajagopal N.; Talbot, Neil C.; Steer, Clifford J.
Abstract
AIM: To identify the genes induced and regulated by the MYC protein in generating tumors from liver stem cells. METHODS: In this study, we have used an immortal porcine liver stem cell line, PICM-19, to study the role of c-MYC in hepatocarcinogenesis. PICM-19 cells were converted into cancer cells (PICM-19-CSCs) by over-expressing human MYC. To identify MYC-driven differential gene expression, transcriptome sequencing was carried out by RNA sequencing, and genes identified by this method were validated using real-time PCR. In vivo tumorigenicity studies were then conducted by injecting PICM-19-CSCs into the flanks of immunodeficient mice. RESULTS: Our results showed that MYC-overexpressing PICM-19 stem cells formed tumors in immunodeficient mice demonstrating that a single oncogene was sufficient to convert them into cancer cells (PICM-19-CSCs). By using comparative bioinformatics analyses, we have determined that > 1000 genes were differentially expressed between PICM-19 and PICM-19-CSCs. Gene ontology analysis further showed that the MYC-induced, altered gene expression was primarily associated with various cellular processes, such as metabolism, cell adhesion, growth and proliferation, cell cycle, inflammation and tumorigenesis. Interestingly, six genes expressed by PICM-19 cells (CDO1, C22orf39, DKK2, ENPEP, GPX6, SRPX2) were completely silenced after MYC-induction in PICM-19-CSCs, suggesting that the absence of these genes may be critical for inducing tumorigenesis. CONCLUSION: MYC-driven genes may serve as promising candidates for the development of hepatocellular carcinoma therapeutics that would not have deleterious effects on other cell types in the liver.