Molecular Determinants of Thyroid Nodules with Indeterminate Cytology andRASMutations
THYROID
Authors: Hernandez-Prera, Juan C.; Valderrabano, Pablo; Creed, Jordan H.; de la Iglesia, Janis, V; Slebos, Robbert J. C.; Centeno, Barbara A.; Tarasova, Valentina; Hallanger-Johnson, Julie; Veloski, Colleen; Otto, Kristen J.; Wenig, Bruce M.; Yoder, Sean J.; Lam, Cesar A.; Park, Derek S.; Anderson, Alexander R.; Raghunand, Natarajan; Berglund, Anders; Caudell, Jimmy; Gerke, Travis A.; Chung, Christine H.
Abstract
Background:RASgene family mutations are the most prevalent in thyroid nodules with indeterminate cytology and are present in a wide spectrum of histological diagnoses. We evaluated differentially expressed genes and signaling pathways across the histological/clinical spectrum ofRAS-mutant nodules to determine key molecular determinants associated with a high risk of malignancy. Methods:Sixty-one thyroid nodules withRASmutations were identified. Based on the histological diagnosis and biological behavior, the nodules were grouped into five categories indicating their degree of malignancy: non-neoplastic appearance, benign neoplasm, indeterminate malignant potential, low-risk cancer, or high-risk cancer. Gene expression profiles of these nodules were determined using the NanoString PanCancer Pathways and IO 360 Panels, and Angiopoietin-2 level was determined by immunohistochemical staining. Results:The analysis of differentially expressed genes using the five categories as supervising parameters unearthed a significant correlation between the degree of malignancy and genes involved in cell cycle and apoptosis (BAX,CCNE2,CDKN2A,CDKN2B,CHEK1,E2F1,GSK3B,NFKB1, andPRKAR2A),PI3Kpathway (CCNE2,CSF3,GSKB3,NFKB1,PPP2R2C, andSGK2), and stromal factors (ANGPT2andDLL4). The expression of Angiopoietin-2 by immunohistochemistry also showed the same trend of increasing expression from non-neoplastic appearance to high-risk cancer (p < 0.0001). Conclusions:The gene expression analysis ofRAS-mutant thyroid nodules suggests increasing upregulation of key oncogenic pathways depending on their degree of malignancy and supports the concept of a stepwise progression. The utility ofANGPT2expression as a potential diagnostic biomarker warrants further evaluation.
Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count
HUMAN MOLECULAR GENETICS
Authors: Okada, Yukinori; Kamatani, Yoichiro; Takahashi, Atsushi; Matsuda, Koichi; Hosono, Naoya; Ohmiya, Hiroko; Daigo, Yataro; Yamamoto, Kazuhiko; Kubo, Michiaki; Nakamura, Yusuke; Kamatani, Naoyuki
Abstract
Neutrophils are the most abundant subtype of white blood cells (WBCs). Although the regulation of the numbers of neutrophils would have substantial clinical impacts, the studies on the variations associated with neutrophil count had not been performed further. To investigate genetic variations that regulate neutrophil count, we performed a genome-wide association study in 5771 Japanese subjects and a replication study using independent 1894 Japanese subjects. We identified two genetic loci significantly associated with neutrophil count (rs4794822 in PSMD3-CSF3 at 17q21.1, P = 6.3 x 10(-10); rs2072910 in PLCB4 at 20p12, P = 3.1 x 10(-10)). As these loci did not indicate significant associations with the counts of the other subtypes of WBCs (lymphocytes, monocytes, eosinophils and basophils), their specific associations with neutrophils were suggested. The combination of the single nucleotide polymorphisms (SNPs) in these two loci explained 1.0% of the total variance of the log-transformed values of the neutrophil count in our study populations. The subjects who were homozygous for 'neutrophil-increasing alleles' in both of the SNPs (T alleles for rs4794822 and rs2072910) had 1.17-fold (95% confidence interval: 1.10-1.24) higher neutrophil count when compared with the subjects homozygous for 'neutrophil-decreasing alleles' (C alleles for rs4794822 and rs2072910). In conclusion, our study would demonstrate the significant contribution of PSMD3-CSF3 and PLCB4 loci to the regulation of neutrophil count.