Genetic associations of inflammatory bowel disease in a South Asian population
WORLD JOURNAL OF CLINICAL CASES
Authors: Niriella, Madunil Anuk; Liyanage, Isurujith Kongala; Kodisinghe, Senerath Kuleesha; De Silva, Arjuna Priyadarsin; Rajapakshe, Nimna; Nanayakkara, Sunali D.; Luke, Dunya; Silva, Thilakshi; Nawarathne, Metthananda; Peiris, Ranjith K.; Kalubovila, Udaya P.; Kumarasena, Sujeewa R.; Dissanayake, Vajira Harshadeva Weerabaddana; Jayasekara, Rohan W.; de Silva, Hithanadura Janaka
Abstract
AIM To estimate prevalence and phenotypic associations of selected inflammatory bowel disease (IBD)-associated genetic variants among Sri Lankan patients. METHODS A case study of histologically confirmed ulcerative colitis (UC) or Crohn's disease (CD) patients with >= 1 year disease duration, who were compared to unrelated, gender-matched, healthy individuals as controls, was conducted at four major centers in Sri Lanka. Phenotypic data of the cases were obtained and all participants were genotyped for 16 selected genetic variants: IL12B:rs1045431, IL23R:rs11805303, ARPC2:rs12612347, IRGM:rs13361189, IL26/IL22:rs1558744, CDH1:151728785, IL10:rs3024505, FCGR2A:rs3737240, PTGER4:rs4613763, IL17REL/PIM3:rs5771069, HNF4a:rs6017342, STAT3:rs744166, SMURF1:rs57809799, LAMB1:rs886774, HLA-DRB5, DQA1, DRB1, DRA:rs9268853, MST1, UBA7, and APEH:rs9822268. The genotypes of all variants were in Hardy-Weinberg Equilibrium (P > 10(-3)). To account for multiple hypothesis testing, P-values < 0.003 were considered significant. RESULTS A total of 415 patients and 465 controls were recruited. Out of the single nucleotide polymorphisms (SNPs) tested, the majority were not associated with IBD in Sri Lankans. Significant positive associations were noted between rs886774 (LAMB1-gene) and UC (odds ratio (OR) = 1.42, P = 0.001). UC patients with rs886774 had mild disease (OR = 1.66, P < 0.001) and remained in remission (OR = 1.48, P < 0.001). A positive association was noted between rs10045431 (IL 12B gene) and upper gastrointestinal involvement in CD (OR = 4.76, P = 0.002). CONCLUSION This confirms the heterogeneity of allelic mutations in South Asians compared to Caucasians. Most SNPs and disease associations reported here have not been described in South Asians.
Influence of acylpeptide hydrolase polymorphisms on valproic acid level in Chinese epilepsy patients
PHARMACOGENOMICS
Authors: Wen, Zhi Peng; Fan, Shuang Shi; Du, Can; Yin, Tao; Zhou, Bo Ting; Peng, Ze Feng; Xie, Yuan Yang; Zhang, Wei; Chen, Yao; Tang, Jie; Xiao, Jian; Chen, Xiao Ping
Abstract
Background: Concomitant use of meropenem (MEPM) can dramatically decrease valproic acid (VPA) plasma level. It is accepted that inhibition in acylpeptide hydrolase (APEH) activity by MEPM coadministration was the trigger of this drug-drug interaction. Aim: To investigate the influence of APEH genetic polymorphisms on VPA plasma concentration in Chinese epilepsy patients. Patients & methods: Urinary VPA-d6 beta-D-glucuronide concentration was determined in 19 patients with VPA treatment alone (n = 10) or concomitant use with MEPM (n = 9). A retrospective study was performed on 149 epilepsy patients to investigate the influence of APEH polymorphisms rs3816877 and rs1131095 on adjusted plasma VPA concentration (C-VPA) at steady-state. Results: Urinary VPA-d6 beta-D-glucuronide (VPA-G) concentration was increased significantly in patients with MEPM coadministration. The C-VPA of patients carrying the APEH rs3816877 C/C genotype was significantly higher than that of C/T carriers, and the difference was still obvious when stratified by UGT2B7 rs7668258 polymorphism. Conclusion: APEH polymorphism has significant influence on VPA pharmacokinetics in Chinese population.