pH dependent chelation study of Zn(II) and Ni(II) by a series of hexapeptides using electrospray ionization - Ion mobility - Mass spectrometry
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
Authors: Ilesanmi, Ayobami B.; Moore, Tessa C.; Angel, Laurence A.
Abstract
Presented here are the results of a study characterizing the selective metal chelating performance of the alternative metal binding (amb) peptide: acetyl-His(1)-Cys(2)-Gly(3)-Pro(4)-His(5)-Cys(6)-OH, and eight ambs with systematic modifications to His, Cys, and carboxyl C-terminus metal chelating sites. The results show that from the divalent metal ions of zinc, nickel, cobalt, magnesium and calcium, the ambs most extensively formed complexes with zinc and nickel. The ambs, which retained both Cys(2) and Cys(6) in their primary structure, exhibited the greatest formation of zinc complexes. The replacement of His(1) and His(5) residues with two additional Cys with the amidation of the C-terminus also increased the zinc chelation at pH 7.0. Density functional theory indicated that these modifications might be disrupting the hydrogen bonding between the His-Cys and carboxylate terminus making the 4Cys more available for chelation. Nickel chelation was generally lower than zinc because of competition from the Cys to form disulfide bonds in the presence of nickel. The two ambs that formed the highest number of nickel complexes both included the amidated C-termini and either 4Cys or 2Cys-2His. Comparison with recent published results of six heptapeptide ambs, which have the same primary structures, but with the inclusion of Tyr(5) before the final two residues, indicates the inclusion of the Tyr(5) residue increases the zinc chelation at pH 7.0 from 25%, of total observed species, to 70%. These types of studies may pave the way to discoveries of new therapeutics suitable as enzyme inhibitors or chelators for diseases associated with metal homeostasis misbalances, or as new peptide tags for recombinant protein purification. (C) 2020 Elsevier B.V. All rights reserved.
Different Solvent and Conformational Entropy Contributions to the Allosteric Activation and Inhibition Mechanisms of Yeast Chorismate Mutase
BIOCHEMISTRY
Authors: Gorman, Scott D.; Winston, Dennis S.; Sahu, Debashish; Boehr, David D.
Abstract
Allosteric regulation is important in many biological processes, including cell signaling, gene regulation, and metabolism. Saccharomyces cerevisiae chorismate mutase (ScCM) is a key homodimeric enzyme in the shikimate pathway responsible for the generation of aromatic amino acids, where it is allosterically inhibited and activated by Tyr and Trp, respectively. Our previous studies indicated that binding of both allosteric effectors is negatively cooperative, that is binding at one allosteric binding site discourages binding at the other, due to the entropic penalty of binding the second allosteric effector. We utilized variable temperature isothermal titration calorimetry (ITC) and nuclear magnetic resonance (NMR) experiments to better understand the entropic contributions to allosteric effector binding, including changes to solvent entropy and protein conformational entropy. Upon binding either Tyr or Trp, ScCM experiences a quenching of motions on the picosecond-to-nanosecond time scale, which we could relate to a loss of protein conformational entropy. Further ITC and NMR studies were consistent with the Tyr-bound form of ScCM being associated with more water molecules compared to the Trp-bound form and Tyr binding being associated with a less positive solvent entropy change. These studies provide insight into the role of structural dynamics in ScCM function and highlight the importance of solvent entropy changes in allosteric regulation, a historically underappreciated concept.