A novel type of sequence variation: Multiple-nucleotide length polymorphisms discovered in the bovine genome
GENETICS
Authors: Jiang, Zhihua; Wang, Zeping; Kunej, Tanja; Williams, Galen A.; Michal, Jennifer J.; Wu, Xiao-Lin; Magnuson, Nancy S.
Abstract
Three types of sequence variations-single-nucleotide polymorphisms (SNPs), insertions and deletions (indels), and short tandem repeats (STRs)-have been extensively reported in mammalian genomes. In this Study, we discovered a novel type of sequence variation, i.e., muliple-nucleotide length polymorphisms (MNLPs) in bovine UCN3 (Urocortin 3) and its receptor CRHR2 (corticotropin-releasing hormone receptor 2) genes. Both MNLPs featured involvement of nrultiple-nucleotide length polymorphisrns (5-18 bases), low sequence identity, and 1.7- to 11-fold changes in promoter activity between two alleles. Therefore, this novel genetic complexity would contribute significantly to the evolutionary, functional, and phenotypic complexity of genomes within or among species.
Polymorphisms in inflammation-related genes are associated with susceptibility to major depression and antidepressant response
MOLECULAR PSYCHIATRY
Authors: Wong, M-L; Dong, C.; Maestre-Mesa, J.; Licinio, J.
Abstract
There are clinical parallels between the nature and course of depressive symptoms in major depressive disorder (MDD) and those of inflammatory disorders. However, the characterization of a possible immune system dysregulation in MDD has been challenging. Emerging data support the role of T-cell dysfunction. Here we report the association of MDD and antidepressant response to genes important in the modulation of the hypothalamic -pituitary adrenal axis and immune functions in Mexican Americans with major depression. Specifically, single nucleotide polymorphisms (SNPs) in two genes critical for T-cell function are associated with susceptibility to MDD: PSMB4 (proteasome beta 4 subunit), important for antigen processing, and TBX21 (T bet), critical for differentiation. Our analyses revealed a significant combined allele dose -effect: individuals who had one, two and three risk alleles were 2.3, 3.2 and 9.8 times more likely to have the diagnosis of MDD, respectively. We found associations of several SNPs and antidepressant response; those genes support the role of T cell (CD3E, PRKCH, PSMD9 and STAT3) and hypothalamic -pituitary -adrenal axis (UCN3) functions in treatment response. We also describe in MDD increased levels of CXCL10/IP-10, which decreased in response to antidepressants. This further suggests predominance of type 1 T-cell activity in MDD. T-cell function variations that we describe here may account for 47.8% of the attributable risk in Mexican Americans with moderate MDD. Immune function genes are highly variable; therefore, different genes might be implicated in distinct population groups.