The RNA-binding protein QKI-7 recruits the poly(A) polymerase GLD-2 for 3? adenylation and selective stabilization of microRNA-122
JOURNAL OF BIOLOGICAL CHEMISTRY
Authors: Hojo, Hiroaki; Yashiro, Yuka; Noda, Yuta; Ogami, Koichi; Yamagishi, Ryota; Okada, Shunpei; Hoshino, Shin-ichi; Suzuki, Tsutomu
Abstract
MicroRNA-122 (miR-122) is highly expressed in hepatocytes, where it plays an important role in regulating cholesterol and fatty acid metabolism, and it is also a host factor required for hepatitis C virus replication. miR-122 is selectively stabilized by 3? adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2 (also known as PAPD4 or TENT2). However, it is unclear how GLD-2 specifically stabilizes miR-122. Here, we show that QKI7 KH domain-containing RNA binding (QKI-7), one of three isoforms of the QKI proteins, which are members of the signal transduction and activation of RNA (STAR) family of RNA-binding proteins, is involved in miR-122 stabilization. QKI down-regulation specifically decreased the steady-state level of mature miR-122, but did not affect the pre-miR-122 level. We also found that QKI-7 uses its C-terminal region to interact with GLD-2 and its QUA2 domain to associate with the RNA-induced silencing complex protein Argonaute 2 (Ago2), indicating that the GLD-2?QKI-7 interaction recruits GLD-2 to Ago2. QKI-7 exhibited specific affinity to miR-122 and significantly promoted GLD-2?mediated 3? adenylation of miR-122 in vitro. Taken together, our findings indicate that miR-122 binds Ago2?interacting QKI-7, which recruits GLD-2 for 3? adenylation and stabilization of miR-122.
A possible new mechanism for the control of miRNA expression in neurons
EXPERIMENTAL NEUROLOGY
Authors: Kinjo, Erika Reime; Vilar Higa, Guilherme Shigueto; de Sousa, Erica; Nocera Casado, Otavio Augusto; Damico, Marcio Vinicius; Britto, Luiz Roberto G.; Kihara, Alexandre Hiroaki
Abstract
The control of gene expression by miRNAs has been widely investigated in different species and cell types. Following a probabilistic rather than a deterministic regimen, the action of these short nucleotide sequences on specific genes depends on intracellular concentration, which in turn reflects the balance between biosynthesis and degradation. Recent studies have described the involvement of XRN2, an exoribonuclease, in miRNA degradation and PAPD4, an atypical poly(A) polymerase, in miRNA stability. Herein, we examined the expression of XRN2 and PAPD4 in developing and adult rat hippocampi. Combining bioinformatics and real-time PCR, we demonstrated that XRN2 and PAPD4 expression is regulated by the uncorrelated action of transcription factors, resulting in distinct gene expression profiles during development. Analyses of nuclei position and nestin labeling revealed that both proteins progressively accumulated during neuronal differentiation, and that they are weakly expressed in in immature neurons and absent in glial and endothelial cells. Despite the differences in subcellular localization, both genes were concurrently identified within identical neuronal subpopulations, including specific inhibitory interneurons. Thus, we cope with a singular circumstance in biology: an almost complete intersected expression of functional-opposed genes, reinforcing that their antagonistically driven actions on miRNAs "make sense" if simultaneously present at the same cells. Considering that the transcriptome in the nervous system is finely tuned to physiological processes, it was remarkable that miRNA stability-related genes were concurrently identified in neurons that play essential roles in cognitive functions such as memory and learning. In summary, this study reveals a possible new mechanism for the control of miRNA expression. (C) 2013 Elsevier Inc. All rights reserved.