Long-term genome-wide blood RNA expression profiles yield novel molecular response candidates for IFN-beta-1b treatment in relapsing remitting MS
PHARMACOGENOMICS
Authors: Goertsches, Robert H.; Hecker, Michael; Koczan, Dirk; Serrano-Fernandez, Pablo; Moeller, Steffen; Thiesen, Hans-Juergen; Zettl, Uwe K.
Abstract
Aims: In multiple sclerosis patients, treatment with recombinant IFN-beta (rIFN-beta) is partially efficient in reducing clinical exacerbations. However, its molecular mechanism of action is still under scrutiny. Materials & methods: We used DNA microarrays (Affymetrix, CA, USA) and peripheral mononuclear blood cells from 25 relapsing remitting multiple sclerosis patients to analyze the longitudinal transcriptional profile within 2 years of rIFN-beta administration. Sets of differentially expressed genes were attained by applying a combination of independent criteria, thereby providing efficient data curation and gene filtering that accounted for technical and biological noise. Gene ontology term-association analysis and scientific literature text mining were used to explore evidence of gene interaction. Results: Post-therapy initiation, we identified 42 (day 2), 175 (month 1), 103 (month 12) and 108 (month 24) differentially expressed genes. Increased expression of established IFN-beta marker genes, as well as differential expression of circulating IFN-beta-responsive candidate genes, were observed. MS4A1 (CD20), a known target of B-cell depletion therapy, was significantly downregulated after one month. CMPK2, FCER1A, and FFAR2 appeared as hitherto unrecognized multiple sclerosis treatment-related differentially expressed genes that were consistently modulated over time. Overall, 84 interactions between 54 genes were attained, of which two major gene networks were identified at an earlier stage of therapy: the first (n = 15 genes) consisted of mostly known IFN-beta-activated genes, whereas the second (n = 12) mainly contained downregulated genes that to date have not been associated with IFN-beta effects in multiple sclerosis array research. Conclusion: We achieved both a broadening of the knowledge of IFN-beta mechanism-of-action-related constituents and the identification of time-dependent interactions between IFN-beta regulated genes.
The Fc epsilon RI beta homologue, MS4A4A, promotes Fc epsilon RI signal transduction and store-operated Ca2+ entry in human mast cells
CELLULAR SIGNALLING
Authors: Arthur, Greer K.; Ehrhardt-Humbert, Lauren C.; Snider, Douglas B.; Jania, Corey; Tilley, Stephen L.; Metcalfe, Dean D.; Cruse, Glenn
Abstract
Members of the membrane spanning 4A (MS4A) gene family are clustered around 11q12-13, a region linked to allergy and asthma susceptibility. Other than the known functions of Fc epsilon RI beta (MS4A2) and CD20 (MS4A1) in mast cell and B cell signaling, respectively, functional studies for the remaining MS4A proteins are lacking. We thus explored whether MS4A4A, a mast cell expressed homologue of Fc epsilon RI beta, has related functions to Fc epsilon RI beta in Fc epsilon RI signaling. We establish in this study that MS4A4A promotes phosphorylation of PLC gamma 1, calcium flux and degranulation in response to IgE-mediated crosslinking of Fc epsilon RI. We previously demonstrated that MS4A4A promotes recruitment of KIT into caveolin-1-enriched microdomains and signaling through PLC gamma 1. Caveolin-1 itself is an important regulator of IgE-dependent store-operated Ca2+ entry (SOCE) and promotes expression of the store-operated Ca2+ channel pore-forming unit, Orai1. We thus further report that MS4A4A functions through interaction with caveolin-1 and recruitment of Fc epsilon RI and KIT into lipid rafts. In addition to proximal Fc epsilon RI signaling, we similarly show that MS4A4A regulates Orai1-mediated calcium entry downstream of calcium release from stores. Both MS4A4A and Orai1 had limited effects with compound 48/80 stimulation, demonstrating some degree of selectivity of both proteins to Fc epsilon RI receptor signaling over Mas-related G Protein coupled receptor X2 signaling. Overall, our data are consistent with the conclusion that MS4A4A performs a related function to the homologous Fc epsilon RI beta to promote PLC gamma 1 signaling, SOCE, and degranulation through Fc epsilon RI in human mast cells and thus represents a new target in the regulation of IgE-mediated mast cell activation.