Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma
HUMAN MOLECULAR GENETICS
Authors: Shiga, Yukihiro; Akiyama, Masato; Nishiguchi, Koji M.; Sato, Kota; Shimozawa, Nobuhiro; Takahashi, Atsushi; Momozawa, Yukihide; Hirata, Makoto; Matsuda, Koichi; Yamaji, Taiki; Iwasaki, Motoki; Tsugane, Shoichiro; Oze, Isao; Mikami, Haruo; Naito, Mariko; Wakai, Kenji; Yoshikawa, Munemitsu; Miyake, Masahiro; Yamashiro, Kenji; Kashiwagi, Kenji; Iwata, Takeshi; Mabuchi, Fumihiko; Takamoto, Mitsuko; Ozaki, Mineo; Kawase, Kazuhide; Aihara, Makoto; Araie, Makoto; Yamamoto, Tetsuya; Kiuchi, Yoshiaki; Nakamura, Makoto; Ikeda, Yasuhiro; Sonoda, Koh-Hei; Ishibashi, Tatsuro; Nitta, Koji; Iwase, Aiko; Shirato, Shiroaki; Oka, Yoshitaka; Satoh, Mamoru; Sasaki, Makoto; Fuse, Nobuo; Suzuki, Yoichi; Cheng, Ching-Yu; Khor, Chiea Chuen; Baskaran, Mani; Perera, Shamira; Aung, Tin; Vithana, Eranga N.; Bailey, Jessica N. Cooke; Kang, Jae H.; Pasquale, Louis R.; Haines, Jonathan L.; Wiggs, Janey L.; Burdon, Kathryn P.; Gharahkhani, Puya; Hewitt, Alex W.; Mackey, David A.; MacGregor, Stuart; Craig, Jamie E.; Allingham, R. Rand; Hauser, Micheal; Ashaye, Adeyinka; Budenz, Donald L.; Akafo, Stephan; Williams, Susan E. I.; Kamatani, Yoichiro; Nakazawa, Toru; Kubo, Michiaki
Abstract
Primary open-angle glaucoma (POAG) is the leading cause of irreversible blindness worldwide for which 15 disease-associated loci had been discovered. Among them, only 5 loci have been associated with POAG in Asians. We carried out a genome-wide association study and a replication study that included a total of 7378 POAG cases and 36 385 controls from a Japanese population. After combining the genome-wide association study and the two replication sets, we identified 11 POAG-associated loci, including 4 known (CDKN2B-AS1, ABCA1, SIX6 and AFAP1) and 7 novel loci (FNDC3B, ANKRD55-MAP3K1, LMX1B, LHPP, HMGA2, MEIS2 and LOXL1) at a genome-wide significance level (P< 5.0 x 10(-8)), bringing the total number of POAG-susceptibility loci to 22. The 7 novel variants were subsequently evaluated in a multiethnic population comprising non-Japanese East Asians (1008 cases, 591 controls), Europeans (5008 cases, 35 472 controls) and Africans (2341 cases, 2037 controls). The candidate genes located within the new loci were related to ocular development (LMX1B, HMGA2 and MAP3K1) and glaucoma-related phenotypes (FNDC3B, LMX1B and LOXL1). Pathway analysis suggested epidermal growth factor receptor signaling might be involved in POAG pathogenesis. Genetic correlation analysis revealed the relationships between POAG and systemic diseases, including type 2 diabetes and cardiovascular diseases. These results improve our understanding of the genetic factors that affect the risk of developing POAG and provide new insight into the genetic architecture of POAG in Asians.
Interaction of two functional genetic variants LOXL1 rs1048661 and VEGFA rs3025039 on the risk of age-related macular degeneration in Chinese women
ANNALS OF TRANSLATIONAL MEDICINE
Authors: Chen, Han; Mo, Miao; Liu, Guang-Yu; Gong, Yang-Ming; Yu, Ke-Da; Xu, Ge-Zhi
Abstract
Background: Cumulative evidence indicates that LOXL1 and VEGF-a play important roles in extracellular matrix formation and angiogenesis, respectively. The disorder of extracellular matrix and angiogenesis are the key factors of pathogenesis of age-related macular degeneration (AMD). We hypothesized that rs1048661 (T>G) in the LOXL1 gene and rs3025039 (C>T) in the VEGFA gene might be associated with risk of AMD. Methods: A total of 533 unrelated Chinese subjects, 286 cases (247 with early AMD and 39 with late neovascular AMD) and 247 controls, were included in the study. The gene sequences of LOXL1 rs1048661 and VEGFA rs3025039 were amplified by polymerase chain reaction and genotyped. Interaction between rs1048661 and rs3025039 on AMD risk was also assessed. Results: LOXL1 rs1048661 but not VEGFA rs3025039 was associated with a significantly increased risk of AMD. The adjusted odds ratio was 1.6 (95% CI, 1.1-2.5) for rs1048661 TT + GT genotype compared with GG homozygotes in the dominant model analysis. Moreover, there was a significant gene-gene interaction between these two polymorphic loci. In VEGFA rs3025039 CC + CT genotype which indicated sufficient expression of VEGF-a, LOXL1 rs1048661 had odds ratios of 1.7 (95% CI, 1.1-2.7) for early AMD and 3.6 (95% CI, 1.1-12.3) for late neovascular AMD in the dominant model analysis. However, LOXL1 rs1048661 did not confer the risk of AMD in subjects harboring VEGFA rs3025039 TT genotype which indicated decreased expression of VEGF-a. Conclusions: Our findings suggest that LOXL1 rs1048661 (T>G) may be involved in the risk of AMD. In addition, LOXL1 rs1048661 and VEGFA rs3025039 interacted to confer the development of AMD, especially for late-stage neovascular AMD. Our data need to be further validated.