SNPs in genes coding for ROS metabolism and signalling in association with docetaxel clearance
PHARMACOGENOMICS JOURNAL
Authors: Edvardsen, H.; Brunsvig, P. F.; Solvang, H.; Tsalenko, A.; Andersen, A.; Syvanen, A-C; Yakhini, Z.; Borresen-Dale, A-L; Olsen, H.; Aamdal, S.; Kristensen, V. N.
Abstract
The dose of docetaxel is currently calculated based on body surface area and does not reflect the pharmacokinetic, metabolic potential or genetic background of the patients. The influence of genetic variation on the clearance of docetaxel was analysed in a two-stage analysis. In step one, 583 single-nucleotide polymorphisms (SNPs) in 203 genes were genotyped on samples from 24 patients with locally advanced non-small cell lung cancer. We found that many of the genes harbour several SNPs associated with clearance of docetaxel. Most notably these were four SNPs in EGF, three SNPs in PRDX4 and XPC, and two SNPs in GSTA4, TGFBR2, TNFAIP2, BCL2, DPYD and EGFR. The multiple SNPs per gene suggested the existence of common haplotypes associated with clearance. These were confirmed with detailed haplotype analysis. On the basis of analysis of variance (ANOVA), quantitative mutual information score (QMIS) and Kruskal-Wallis (KW) analysis SNPs significantly associated with clearance of docetaxel were confirmed for GSTA4, PRDX4, TGFBR2 and XPC and additional putative markers were found in CYP2C8, EPHX1, IGF2, IL1R2, MAPK7, NDUFB4, TGFBR3, TPMT (2 SNPs), (P<0.05 or borderline significant for all three methods, 14 SNPs in total). In step two, these 14 SNPs were genotyped in additional 9 samples and the results combined with the genotyping results from the first step. For 7 of the 14 SNPs, the results are still significant/borderline significant by all three methods: ANOVA, QMIS and KW analysis strengthening our hypothesis that they are associated with the clearance of docetaxel. The Pharmacogenomics Journal (2010) 10, 513-523; doi:10.1038/tpj.2010.6; published online 16 February 2010
Coronary vessel development is dependent on the type III transforming growth factor beta receptor
CIRCULATION RESEARCH
Authors: Compton, Leigh A.; Potash, Dru A.; Brown, Christopher B.; Barnett, Joey V.
Abstract
Transforming growth factor (TGF) beta receptor III (TGF beta R3), or beta-glycan, binds all 3 TGF beta ligands and inhibin with high affinity but lacks the serine/threonine kinase domain found in the type I and type II receptors (TGF beta R1, TGF beta R2). TGF beta R3 facilitates signaling via TGF beta R1/TGF beta R2 but also has been suggested to play a unique and nonredundant role in TGF beta signaling. Targeted deletion of Tgfbr3 revealed a requirement for Tgfbr3 during development of the coronary vessels. Coronary vasculogenesis is significantly impaired in null mice, with few vessels evident and numerous, persistent blood islands found throughout the epicardium. Tgfbr3-null mice die at embryonic day 14.5, the time when functional coronary vasculature is required for embryo viability. However, in null mice nascent coronary vessels attach to the aorta, form 2 coronary ostia, and initiate smooth muscle recruitment by embryonic day 14. Analysis of earlier developmental stages revealed defects in the epicardium. At embryonic day 13.5, these defects include an irregular and hypercellular epicardium with abundant subepicardial mesenchyme and a thin compact zone myocardium. Tgfbr3-null mice also displayed other defects in coronary development, including dysmorphic and distended vessels along the atrioventricular groove and subepicardial hemorrhage. In null mice, vessels throughout the yolk sac and embryo form and recruit smooth muscle in a pattern indistinguishable from heterozygous or wild-type littermates. These data demonstrate a requirement for Tgfbr3 during coronary vessel development that is essential for embryonic viability.