Comprehensive analysis of bacterial flora of a biofilm model in initial caries-inducing environment
AMERICAN JOURNAL OF DENTISTRY
Authors: Ishizawa, Masato; Tomiyama, Kiyoshi; Hasegawa, Haruhiko; Hamada, Nobushiro; Mukai, Yoshiharu
Abstract
Purpose: To analyze changes in pH and bacterial flora with duration of culture and timing of sugar supply using a polymicrobial biofilm model. Methods: The biofilm was prepared using the method of Exterkate et al. Stimulated saliva from an adult was collected on a glass slide and added to unbuffered McBain medium containing 0.2% sucrose and cultivated under anaerobic conditions for 10 hours. Cultivation continued anaerobically in saliva-free medium refreshed twice daily, with or without sucrose, in five groups: in the Control and Groups A and C, with 0.2% sucrose for 96, 192 and 288 hours, respectively; in Groups B and E, with 0.2% sucrose for 96 hours then, respectively, without for 96 and 192 hours; in Group D, with 0.2% sucrose for 96 hours, without for 96 hours, then with for 96 hours. The pH of all spent medium was measured. Total bacteria counts were determined by Q-PCR. The bacterial composition was determined by next-generation sequencing of 16S rDNA. Results: The pH of spent medium depended on the presence or absence of sucrose. Total bacteria counts were higher in A, C and D than the other groups, and markedly lower in Group E. Principal components analysis and cluster analysis showed wider variation of bacterial flora of the biofilm in Groups B, D and E than other groups.
Reduced In Vitro Susceptibility of Streptococcus pyogenes to beta-Lactam Antibiotics Associated with Mutations in the pbp2x Gene Is Geographically Widespread
JOURNAL OF CLINICAL MICROBIOLOGY
Authors: Musser, James M.; Beres, Stephen B.; Zhu, Luchang; Olsen, Randall J.; Vuopio, Jaana; Hyyrylainen, Hanne-Leena; Grondahl-Yli-Hannuksela, Kirsi; Kristinsson, Karl G.; Darenberg, Jessica; Henriques-Normark, Birgitta; Hoffmann, Steen; Caugant, Dominque A.; Smith, Andrew J.; Lindsay, Diane S. J.; Boragine, David M.; Palzkill, Timothy
Abstract
Recently, two related Streptococcus pyogenes strains with reduced susceptibility to ampicillin, amoxicillin, and cefotaxime, antibiotics commonly used to treat S. pyogenes infections, were reported. The two strains had the same nonsynonymous (amino acid-substituting) mutation in the pbp2x gene, encoding penicillin-binding protein 2X (PBP2X). This concerning report led us to investigate our library of 7,025 genome sequences of type emm1, emm28, and emm89 S. pyogenes clinical strains recovered from intercontinental sources for mutations in pbp2x. We identified 137 strains that, combined, had 37 nonsynonymous mutations in 36 codons in pbp2x. Although to a lesser magnitude than the two previously published isolates, many of our strains had decreased susceptibility in vitro to multiple beta-lactam antibiotics. Many pbp2x mutations were found only in single strains, but 16 groups of two or more isolates of the same emm type had an identical amino acid replacement. Phylogenetic analysis showed that, with one exception, strains of the same emm type with the same amino acid replacement were clonally related by descent. This finding indicates that strains with some amino acid changes in PBP2X can successfully spread to new human hosts and cause invasive infections. Mapping of the amino acid changes onto a three-dimensional structure of the related Streptococcus pneumoniae PBP2X suggests that some substitutions are located in regions functionally important in related pathogenic bacterial species. Decreased beta-lactam susceptibility is geographically widespread in strains of numerically common emm gene subtypes. Enhanced surveillance and further epidemiological and molecular genetic study of this potential emergent antimicrobial problem are warranted.