A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis
HUMAN MOLECULAR GENETICS
Authors: Munz, Matthias; Willenborg, Christina; Richter, Gesa M.; Jockel-Schneider, Yvonne; Graetz, Christian; Staufenbiel, Ingmar; Wellmann, Juergen; Berger, Klaus; Krone, Bastian; Hoffmann, Per; van der Velde, Nathalie; Uitterlinden, Andre G.; de Groot, Lisette C. P. G. M.; Sawalha, Amr H.; Direskeneli, Haner; Saruhan-Direskeneli, Guher; Guzeldemir-Akcakanat, Esra; Keceli, Gencay; Laudes, Matthias; Noack, Barbara; Teumer, Alexander; Holtfreter, Birte; Kocher, Thomas; Eickholz, Peter; Meyle, Joerg; Doerfer, Christof; Bruckmann, Corinna; Lieb, Wolfgang; Franke, Andre; Schreiber, Stefan; Nohutcu, Rahime M.; Erdmann, Jeanette; Loos, Bruno G.; Jepsen, Soeren; Dommisch, Henrik; Schaefer, Arne S.
Abstract
Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome. Previous genome-wide association studies (GWAS) have reported several suggestive susceptibility loci. Here, we conducted a GWAS using a German and Dutch case-control sample of aggressive periodontitis (AgP, 896 cases, 7,104 controls), a rare but highly severe and early-onset form of periodontitis, validated the associations in a German sample of severe forms of the more moderate phenotype chronic periodontitis (CP) (993 cases, 1,419 controls). Positive findings were replicated in a Turkish sample of AgP (223 cases, 564 controls). A locus at SIGLEC5 (sialic acid binding Ig-like lectin 5) and a chromosomal region downstream of the DEFA1A3 locus (defensin alpha 1-3) showed association with both disease phenotypes and were associated with periodontitis at a genome-wide significance level in the pooled samples, with P = 1.09E-08 (rs4284742,-G; OR = 1.34, 95% CI = 1.21-1.48) and P = 5.48E-10 (rs2738058,-T; OR = 1.28, 95% CI = 1.18-1.38), respectively. SIGLEC5 is expressed in various myeloid immune cells and classified as an inhibitory receptor with the potential tomediate tyrosine phosphatases SHP-1/-2 dependent signaling. Alpha defensins are antimicrobial peptides with expression in neutrophils andmucosal surfaces and a role in phagocyte-mediated host defense. This study identifies the first shared genetic risk loci of AgP and CP with genome-wide significance and highlights the role of innate and adaptive immunity in the etiology of periodontitis.
Genetic susceptibility of common polymorphisms in NIN and SIGLEC5 to chronic periodontitis
SCIENTIFIC REPORTS
Authors: Tong, Hua; Wei, Zhuliang; Yin, Jing; Zhang, Bo; Zhang, Tianxiao; Deng, Chunni; Huang, Yali; Zhang, Nan
Abstract
Chronic periodontitis (CP) is a common oral disease characterized by the slow progression of alveolar attachment loss and bone destruction. Genetic components have been reported to play an important role in the onset and development of CP. In the present study, we aimed to replicate the association signals of NIN and SIGLEC5 identified in previous genome-wide association studies (GWASs) of samples from Chinese Han individuals. Association signals between clinical severity indicators of CP and relevant single nucleotide polymorphisms (SNPs) were also examined. A total of 3,160 study subjects, including 1,076 CP patients and 2,084 healthy controls, were recruited. A total of 32 SNPs, including 22 from NIN and 10 from SIGLEC5, were selected for genotyping. SNPs rs12883458 (OR = 1.45, P = 1.22 x 10(-5), NIN) and rs4284742 (OR = 0.75, P = 1.69 x 10(-5), SIGLEC5) were significantly associated with CP disease status. rs4284742 was significantly associated with all 3 clinical severity indicators, including bleeding on probing (BOP), probing depth (PD) and clinical attachment loss (CAL). According to evidence from bioinformatics analyses, both significant SNPs, rs12883458 and rs4284742, are likely surrogates of underlying variants with true effects. In summary, our findings provide direct evidence for the association of NIN and SIGLEC5 with CP susceptibility.