Whole Exome Sequencing Reveals Severe Thrombophilia in Acute Unprovoked Idiopathic Fatal Pulmonary Embolism
EBIOMEDICINE
Authors: Halvorsen, Matt; Lin, Ying; Sampson, Barbara A.; Wang, Dawei; Zhou, Bo; Eng, Lucy S.; Um, Sung Yon; Devinsky, Orrin; Goldstein, David B.; Tang, Yingying
Abstract
Background: Acute unprovoked idiopathic fatal pulmonary embolism (IFPE) causes sudden death without an identifiable thrombogenic risk. We aimed to investigate the underlying genomic risks of IFPE through whole exome sequencing (WES). Methods: We reviewed 14 years of consecutive out-of-hospital fatal pulmonary embolism records (n = 1478) fromthe ethnically diverse population of New York City. We selected 68 qualifying IFPE cases for WES. We compared the WES data of IFPE cases to those of 9332 controls to determine if there is an excess of rare damaging variants in the genome using ethnicity-matched controls in collapsing analyses. Findings: We found nine of the 68 decedents (13.2%) who died of IFPE had at least one pathogenic or likely pathogenic variant in one of the three anti-coagulant genes: SERPINC1 (Antithrombin III), PROC, and PROS1. The odds ratio of developing IFPE as a variant carrier for SERPINC1 is 144.2 (95% CI, 26.3-779.4; P=1.7 x 10(-7)), for PROC is 85.6 (95% CI, 13.0-448.9; P= 2.0 x 10(-5)), and for PROS1 is 56.4 (95% CI, 5.3-351.1; P=0.001). The average age-at-death of anti-coagulant gene variant carriers is significantly younger than that of non-carriers (28.56 years versus 38.02 years; P = 0.01). Interpretation: This study showed the important role of severe thrombophilia due to natural anti-coagulant deficiency in IFPE. Evaluating severe thrombophilia in out-of-hospital fatal PE beyond IFPE is warranted. (C) 2017 The Authors. Published by Elsevier B.V.
Two Novel Mutations Cause Hereditary Antithrombin Deficiency in a Chinese Family
ACTA HAEMATOLOGICA
Authors: Zhang, Haiyue; Liu, Siqi; Luo, Shasha; Jin, Yanhui; Yang, Lihong; Xie, Haixiao; Pan, Jingye; Wang, Mingshan
Abstract
Objective:To study the molecular basis of hereditary antithrombin (AT) deficiency in a Chinese family. It will help us understand the pathogenesis of this type of disease.Method:AT activity (AT:A) and the AT antigen (AT:Ag) level were tested by chromogenic substrate and immunoturbidimetry, respectively. To identify the novel mutations,SERPINC1gene sequencing was carried out. The possible impact of the mutations was analyzed by model and bioinformatic analyses.Results:AT:A and the AT:Ag level of the proband were 43% and 113 mg/L (normal range: 98-119% and 250-360 mg/L), respectively. Sequencing analysis revealed compound heterozygous mutations, including a frameshift mutation (c.318_319insT) resulting in Asn75stop and a missense mutation (c.922G>T) resulting in Gly276Cys. The bioinformatic and model analyses indicated that these mutations may disrupt the function and structure of the AT protein.Conclusion:We detected 2 novel heterozygous mutations (c.318_319insT and c.922G>T) in the proband, and these were associated with decreased AT:A.