High Throughput Molecular Characterization of Normal Karyotype Acute Myeloid Leukemia in the Context of the Prospective Trial 02/06 of the Northern Italy Leukemia Group (NILG)
CANCERS
Authors: Salmoiraghi, Silvia; Cavagna, Roberta; Zanghi, Pamela; Pavoni, Chiara; Michelato, Anna; Buklijas, Ksenija; Elidi, Lara; Intermesoli, Tamara; Lussana, Federico; Oldani, Elena; Caprioli, Chiara; Stefanoni, Paola; Gianfaldoni, Giacomo; Audisio, Ernesta; Terruzzi, Elisabetta; De Paoli, Lorella; Borlenghi, Erika; Cavattoni, Irene; Mattei, Daniele; Scattolin, Annamaria; Tajana, Monica; Ciceri, Fabio; Todisco, Elisabetta; Campiotti, Leonardo; Corradini, Paolo; Fracchiolla, Nicola; Bassan, Renato; Rambaldi, Alessandro; Spinelli, Orietta
Abstract
By way of a Next-Generation Sequencing NGS high throughput approach, we defined the mutational profile in a cohort of 221 normal karyotype acute myeloid leukemia (NK-AML) enrolled into a prospective randomized clinical trial, designed to evaluate an intensified chemotherapy program for remission induction.NPM1,DNMT3A,andFLT3-ITD were the most frequently mutated genes whileDNMT3A,FLT3,IDH1,PTPN11, andRAD21mutations were more common in theNPM1mutated patients (p< 0.05).IDH1R132H mutation was strictly associated withNPM1mutation and mutually exclusive withRUNX1andASXL1. In the whole cohort of NK-AML, no matter the induction chemotherapy used, by multivariate analysis, the achievement of complete remission was negatively affected by theSRSF2mutation. Alterations ofFLT3(FLT3-ITD) andU2AF1were associated with a worse overall and disease-free survival (p< 0.05).FLT3-ITD positive patients who proceeded to alloHSCT had a survival probability similar toFLT3-ITD negative patients and the transplant outcome was no different when comparing high and low-AR-FLT3-ITD subgroups in terms of both OS and DFS. In conclusion, a comprehensive molecular profile for NK-AML allows for the identification of genetic lesions associated to different clinical outcomes and the selection of the most appropriate and effective treatment strategies, including stem cell transplantation and targeted therapies.
Genomic complexity and dynamics of clonal evolution in childhood acute myeloid leukemia studied with whole-exome sequencing
ONCOTARGET
Authors: Masetti, Riccardo; Castelli, Ilaria; Astolfi, Annalisa; Bertuccio, Salvatore Nicola; Indio, Valentina; Togni, Marco; Belotti, Tamara; Serravalle, Salvatore; Tarantino, Giuseppe; Zecca, Marco; Pigazzi, Martina; Basso, Giuseppe; Pession, Andrea; Locatelli, Franco
Abstract
Despite significant improvement in treatment of childhood acute myeloid leukemia (AML), 30% of patients experience disease recurrence, which is still the major cause of treatment failure and death in these patients. To investigate molecular mechanisms underlying relapse, we performed whole-exome sequencing of diagnosis-relapse pairs and matched remission samples from 4 pediatric AML patients without recurrent cytogenetic alterations. Candidate driver mutations were selected for targeted deep sequencing at high coverage, suitable to detect small subclones (0.12%). BiCEBP beta mutation was found to be stable and highly penetrant, representing a separate biological and clinical entity, unlike WT1 mutations, which were extremely unstable. Among the mutational patterns underlying relapse, we detected the acquisition of proliferative advantage by signaling activation (PTPN11 and FLT3-TKD mutations) and the increased resistance to apoptosis (hyperactivation of TYK2). We also found a previously undescribed feature of AML, consisting of a hypermutator phenotype caused by SETD2 inactivation. The consequent accumulation of new mutations promotes the adaptability of the leukemia, contributing to clonal selection. We report a novel ASXL3 mutation characterizing a very small subclone (<1%) present at diagnosis and undergoing expansion (60%) at relapse. Taken together, these findings provide molecular clues for designing optimal therapeutic strategies, in terms of target selection, adequate schedule design and reliable response-monitoring techniques.