Detailed search for protein kinase(s) involved in plasma membrane H+-ATPase activity regulation of yeast cells
FEMS YEAST RESEARCH
Authors: Pereira, Renata R.; Castanheira, Diogo; Teixeira, Janaina A.; Bouillet, Leoneide E. M.; Ribeiro, Erica M. C.; Tropia, Maria M. J.; Alvarez, Florencia; Correa, Lygia F. M.; Mota, Bruno E. F.; Conceicao, Luis Eduardo F. R.; Castro, Ieso M.; Brandao, Rogelio L.
Abstract
This study displays a screening using yeast strains deficient in protein kinases known to exist in Saccharomyces cerevisiae. From 95 viable single mutants, 20 mutants appear to be affected in the glucose-induced extracellular acidification. The mutants that are unaffected in calcium signaling were tested for their sensitivity to hygromycin B. Furthermore, we verified whether the remaining mutants produced enzymes that are appropriately incorporated at plasma membrane. Finally, we measure the kinetic properties of the enzyme in purified plasma membranes from glucose-starved as well as glucose-fermenting cells. We confirmed the kinase Ptk2 involvement in H+-ATPase regulation (increase of affinity for ATP). However, the identification of the kinase(s) responsible for phosphorylation that leads to an increase in V-max appears to be more complex. Complementary experiments were performed to check how those protein kinases could be related to the control of the plasma membrane H+-ATPase and/or the potential membrane. In summary, our results did not permit us to identify the protein kinase(s) involved in regulating the catalytic efficiency of the plasma membrane H+-ATPase. Therefore, our results indicate that the current regulatory model based on the phosphorylation of two different sites located in the C-terminus tail of the enzyme could be inappropriate.
Gene dosage alterations revealed by cDNA microarray analysis in cervical cancer: Identification of candidate amplified and overexpressed genes
GENES CHROMOSOMES & CANCER
Authors: Narayan, Gopeshwar; Bourdon, Veronique; Chaganti, Seeta; Arias-Pulido, Hugo; Nandula, Subhadra V.; Rao, Pulivarthi H.; Gissmann, Lutz; Duerst, Matthias; Schneider, Achim; Pothuri, Bhavana; Mansukhani, Mahesh; Basso, Katia; Chaganti, R. S. K.; Murty, Vundavalli V.
Abstract
Cervical cancer (CC) cells exhibit complex karyotypic alterations, which is consistent with deregulation of numerous critical genes in its formation and progression. To characterize this karyotypic complexity at the molecular level, we used cDNA array comparative genomic hybridization (aCGH) to analyze 29 CC cases and identified a number of over represented and deleted genes. The aCGH analysis revealed at least 17 recurrent amplicons and six common regions of deletions. These regions contain several known tumor-associated genes, such as those involved in transcription, apoptosis, cytoskeletal remodeling, ion-transport, drug metabolism, and immune response. Using the fluorescence in situ hybridization (FISH) approach we demonstrated the presence of high-level amplifications at the 8q24.3, 11q22.2, and 20q13 regions in CC cell lines. To identify amplification-associated genes that correspond to focal amplicons, we examined one or more genes in each of the 17 amplicons by Affymetrix UI33A expression arrays and serniquantitative reverse-transcription PCR (RT-PCR) in 31 CC tumors. This analysis exhibited frequent and robust upregulated expression in CC relative to normal cervix for genes EPHB2 (1p36), CDCA8 (1p34.3), AIM2 (1q22-23), RFC4, MUC4, and HRASLS (3q27-29), SKP2 (5p12-13), CENTD3 (Sq31.3), PTK2, RECQL4 (8q24), MMP1 and MMP13 (11q22.2), AKT1 (14q32.3), ABCC3 (17q21-22), SMARCA4 (19p13.3) LIG1 (19q13.3), UBE2C (20q13.1), SMCIL1 (Xp11), KIRA (Xq12), TMSN8 (Xq22), and CSAG2 (Xq28). Thus, the gene dosage and expression profiles generated here have enabled the identification of focal amplicons characteristic for the CC genome and facilitated the validation of relevant genes in these amplicons. These data, thus, form an important step toward the identification of biologically relevant genes in CC pathogenesis. This article contains Supplementary Material available at http://www.interscience.wiley.com/jpages/ 10452257/suppmat. (c) 2007 Wiley-Liss, Inc.