Integrated microRNA and mRNA sequencing analysis of age-related changes to mouse thymic epithelial cells
IUBMB LIFE
Authors: Jia, Hong-Ling; Zeng, Xiao-Qin; Huang, Feng; Liu, Ya-Meng; Gong, Bi-Shuang; Zhang, Kai-Zhao; Zeng, Jiang-Hui; Guo, Dong-Guang; Wang, Zhuo-Ya; Li, Yu-Gu
Abstract
MicroRNAs (miRNAs) play key roles in the regulation of gene expression during multiple physiological processes, including early development, differentiation, and ageing. However, their involvement in age-related thymic involution is not clear. In this study, we profiled the global transcriptome and miRNAome of thymic epithelial cells in 1- and 3-month-old male and female mice, and predicted the possible transcription factors and target genes of the four most significantly differentially expressed miRNAs (DEMs) (miR-183-5p, miR-199b-5p, miR-205-5p, and miR-200b-3p) by performing bioinformatics analyses. We also evaluated the relationships between the significantly DEMs and mRNAs. We performed quantitative polymerase chain reaction to confirm the changes in the expression of the miRNAs and their predicted target genes. We found that miR-183-5p, miR-199b-5p, miR-205-5p, and miR-200b-3p can be used as a biomarker group for mouse thymus development and involution. In addition, the predicted target genes (Ptpn4, Slc2a9, Pkib, Pecam1, and Prkdc), which were identified by mRNA sequencing analysis, were mainly involved in growth, development, and accelerated senescence. In conclusion, miRNAs and their predicted target genes likely play important roles in thymus development and involution. To the best of our knowledge, this is the first study to systematically analyze the relevance of miRNAs and their targets by mRNA sequencing in mouse thymic epithelial cells. (c) 2018 IUBMB Life, 70(7):678-690, 2018
Early transcriptional changes linked to naturally occurring Huntingtons disease mutations in neural derivatives of human embryonic stem cells
HUMAN MOLECULAR GENETICS
Authors: Feyeux, Maxime; Bourgois-Rocha, Fany; Redfern, Amanda; Giles, Peter; Lefort, Nathalie; Aubert, Sophie; Bonnefond, Caroline; Bugi, Aurore; Ruiz, Marta; Deglon, Nicole; Jones, Lesley; Peschanski, Marc; Allen, Nicholas D.; Perrier, Anselme L.
Abstract
Huntingtons disease (HD) is characterized by a late clinical onset despite ubiquitous expression of the mutant gene at all developmental stages. How mutant huntingtin impacts on signalling pathways in the pre-symptomatic period has remained essentially unexplored in humans due to a lack of appropriate models. Using multiple human embryonic stem cell lines derived from blastocysts diagnosed as carrying the mutant huntingtin gene by pre-implantation genetic diagnosis, we explored early developmental changes in gene expression using differential transcriptomics, combined with gain and loss of function strategies. We demonstrated a down-regulation of the HTT gene itself in HD neural cells and identified three genes, the expression of which differs significantly in HD cells when compared with wild-type controls, namely CHCHD2, TRIM4 and PKIB. Similar dysregulation had been observed previously for CHCDH2 and TRIM4 in blood cells from patients. CHCHD2 is involved in mitochondrial function and PKIB in protein kinase A-dependent pathway regulation, which suggests that these functions may be precociously impacted in HD.