Early transcriptional changes linked to naturally occurring Huntingtons disease mutations in neural derivatives of human embryonic stem cells
HUMAN MOLECULAR GENETICS
Authors: Feyeux, Maxime; Bourgois-Rocha, Fany; Redfern, Amanda; Giles, Peter; Lefort, Nathalie; Aubert, Sophie; Bonnefond, Caroline; Bugi, Aurore; Ruiz, Marta; Deglon, Nicole; Jones, Lesley; Peschanski, Marc; Allen, Nicholas D.; Perrier, Anselme L.
Abstract
Huntingtons disease (HD) is characterized by a late clinical onset despite ubiquitous expression of the mutant gene at all developmental stages. How mutant huntingtin impacts on signalling pathways in the pre-symptomatic period has remained essentially unexplored in humans due to a lack of appropriate models. Using multiple human embryonic stem cell lines derived from blastocysts diagnosed as carrying the mutant huntingtin gene by pre-implantation genetic diagnosis, we explored early developmental changes in gene expression using differential transcriptomics, combined with gain and loss of function strategies. We demonstrated a down-regulation of the HTT gene itself in HD neural cells and identified three genes, the expression of which differs significantly in HD cells when compared with wild-type controls, namely CHCHD2, TRIM4 and PKIB. Similar dysregulation had been observed previously for CHCDH2 and TRIM4 in blood cells from patients. CHCHD2 is involved in mitochondrial function and PKIB in protein kinase A-dependent pathway regulation, which suggests that these functions may be precociously impacted in HD.
Physical map of the chromosome 6q22 region containing the oculodentodigital dysplasia locus: analysis of thirteen candidate genes and identification of novel ESTs and DNA polymorphisms
CYTOGENETIC AND GENOME RESEARCH
Authors: Boyadjiev, SA; Chowdry, AB; Shapiro, RE; Paznekas, WA; Wandstrat, AE; Choi, JW; Kasch, L; Zhang, G; Wollnik, B; Burgess, CE; Schalling, M; Lovett, M; Jabs, EW
Abstract
Oculodentodigital dysplasia (ODDD) is an autosomal dominant condition with congenital anomalies of the craniofacial and limb regions and neurodegeneration. Genetic anticipation for the dysmorphic and neurologic features has been inferred in a few families. Our previous linkage studies have refined the ODDD candidate region to chromosome 6q22 --> q23. In an attempt to clone the ODDD gene, we created a yeast artificial chromosome contig with 31 redundant clones spanning the region and identified and ordered candidate genes and markers. Fluorescent in situ hybridization mapped two of these YAC clones to chromosome 6q22.2 telomeric to a known 6q21 fragile site, excluding it as a possible cause of the suggested anticipation. We performed mutation analysis on thirteen candidate genes-GRIK2, HDAC2, COL10A1, PTD013, KPNA5, PIST, ROS1, BRD7, PLN, HSF2, PKIB, FABP7, and HEY2. Although no mutations were found, we identified 44 polymorphisms, including 28 single nucleotide polymorphisms. Direct cDNA selection was performed and fifty-five clones were found to contain sequences that were not previously reported as known genes or ESTs. These clones and polymorphisms will assist in the further characterization of this region and identification of disease genes. Copyright (C) 2002 S. Karger AG, Basel.