Comparative transcriptomics reveals candidate carotenoid color genes in an East African cichlid fish
BMC GENOMICS
Authors: Ahi, Ehsan Pashay; Lecaudey, Laurene A.; Ziegelbecker, Angelika; Steiner, Oliver; Glabonjat, Ronald; Goessler, Walter; Hois, Victoria; Wagner, Carina; Lass, Achim; Sefc, Kristina M.
Abstract
Background Carotenoids contribute significantly to animal body coloration, including the spectacular color pattern diversity among fishes. Fish, as other animals, derive carotenoids from their diet. Following uptake, transport and metabolic conversion, carotenoids allocated to body coloration are deposited in the chromatophore cells of the integument. The genes involved in these processes are largely unknown. Using RNA-Sequencing, we tested for differential gene expression between carotenoid-colored and white skin regions of a cichlid fish, Tropheus duboisi "Maswa", to identify genes associated with carotenoid-based integumentary coloration. To control for positional gene expression differences that were independent of the presence/absence of carotenoid coloration, we conducted the same analyses in a closely related population, in which both body regions are white. Results A larger number of genes (n = 50) showed higher expression in the yellow compared to the white skin tissue than vice versa (n = 9). Of particular interest was the elevated expression level of bco2a in the white skin samples, as the enzyme encoded by this gene catalyzes the cleavage of carotenoids into colorless derivatives. The set of genes with higher expression levels in the yellow region included genes involved in xanthophore formation (e.g., pax7 and sox10), intracellular pigment mobilization (e.g., tubb, vim, kif5b), as well as uptake (e.g., scarb1) and storage (e.g., plin6) of carotenoids, and metabolic conversion of lipids and retinoids (e.g., dgat2, pnpla2, akr1b1, dhrs). Triglyceride concentrations were similar in the yellow and white skin regions. Extracts of integumentary carotenoids contained zeaxanthin, lutein and beta-cryptoxanthin as well as unidentified carotenoid structures. Conclusion Our results suggest a role of carotenoid cleavage by Bco2 in fish integumentary coloration, analogous to previous findings in birds. The elevated expression of genes in carotenoid-rich skin regions with functions in retinol and lipid metabolism supports hypotheses concerning analogies and shared mechanisms between these metabolic pathways. Overlaps in the sets of differentially expressed genes (including dgat2, bscl2, faxdc2 and retsatl) between the present study and previous, comparable studies in other fish species provide useful hints to potential carotenoid color candidate genes.
Satellite cell-specific ablation of Cdon impairs integrin activation, FGF signalling, and muscle regeneration
JOURNAL OF CACHEXIA SARCOPENIA AND MUSCLE
Authors: Bae, Ju-Hyeon; Hong, Mingi; Jeong, Hyeon-Ju; Kim, Hyebeen; Lee, Sang-Jin; Ryu, Dongryeol; Bae, Gyu-Un; Cho, Sung Chun; Lee, Young-Sam; Krauss, Robert S.; Kang, Jong-Sun
Abstract
Background Perturbation in cell adhesion and growth factor signalling in satellite cells results in decreased muscle regenerative capacity. Cdon (also called Cdo) is a component of cell adhesion complexes implicated in myogenic differentiation, but its role in muscle regeneration remains to be determined. Methods We generated inducible satellite cell-specific Cdon ablation in mice by utilizing a conditional Cdon allele and Pax7 (CreERT2). To induce Cdon ablation, mice were intraperitoneally injected with tamoxifen (tmx). Using cardiotoxin-induced muscle injury, the effect of Cdon depletion on satellite cell function was examined by histochemistry, immunostaining, and 5-ethynyl-2'-deoxyuridine (EdU) incorporation assay. Isolated myofibers or myoblasts were utilized to determine stem cell function and senescence. To determine pathways related to Cdon deletion, injured muscles were subjected to RNA sequencing analysis. Results Satellite cell-specific Cdon ablation causes impaired muscle regeneration with fibrosis, likely attributable to decreased proliferation, and senescence, of satellite cells. Cultured Cdon-depleted myofibers exhibited 32 +/- 9.6% of EdU-positive satellite cells compared with 58 +/- 4.4% satellite cells in control myofibers (P < 0.05). About 32.5 +/- 3.7% Cdon-ablated myoblasts were positive for senescence-associated beta-galactosidase (SA-beta-gal) while only 3.6 +/- 0.5% of control satellite cells were positive (P < 0.001). Transcriptome analysis of muscles at post-injury Day 4 revealed alterations in genes related to mitogen-activated protein kinase signalling (P < 8.29 e(-5)) and extracellular matrix (P < 2.65 e(-24)). Consistent with this, Cdon-depleted tibialis anterior muscles had reduced phosphorylated extracellular signal-regulated kinase (p-ERK) protein levels and expression of ERK targets, such as Fos (0.23-fold) and Egr1 (0.31-fold), relative to mock-treated control muscles (P < 0.001). Cdon-depleted myoblasts exhibited impaired ERK activation in response to basic fibroblast growth factor. Cdon ablation resulted in decreased and/or mislocalized integrin beta 1 activation in satellite cells (weak or mislocalized integrin1 in tmx = 38.7 +/- 1.9%, mock = 21.5 +/- 6%, P < 0.05), previously linked with reduced fibroblast growth factor (FGF) responsiveness in aged satellite cells. In mechanistic studies, Cdon interacted with and regulated cell surface localization of FGFR1 and FGFR4, likely contributing to FGF responsiveness of satellite cells. Satellite cells from a progeria model, Zmpste24(-/-) myofibers, showed decreased Cdon levels (Cdon-positive cells in Zmpste24(-/-) = 63.3 +/- 11%, wild type = 90 +/- 7.7%, P < 0.05) and integrin beta 1 activation (weak or mislocalized integrin beta 1 in Zmpste24(-/-) = 64 +/- 6.9%, wild type = 17.4 +/- 5.9%, P < 0.01). Conclusions Cdon deficiency in satellite cells causes impaired proliferation of satellite cells and muscle regeneration via aberrant integrin and FGFR signalling.