Genome-wide analysis of the ovodefensin gene family: Monophyletic origin, independent gene duplication and presence of different selection patterns
INFECTION GENETICS AND EVOLUTION
Authors: Zhang, Long; Chen, Dongmei; Yu, Lintian; Wei, Yi; Li, Juan; Zhou, Caiquan
Abstract
Ovodefensins (OvoDs) represent a group of cysteine-rich host defense peptides that are abundant in the egg white. Recent studies have found that ovodefensins are specific to birds and replies. However, the entire repertoire and evolutionary relationships of this gene family have not been thoroughly elucidated to date. Following our cross-species and genome-wide computational study, a total of 94 ovodefensin genes with multiple novel cysteine sequence motifs were identified from 22 phylogenetically divergent species. Phylogenetic analysis suggests that a large number of OvoDs evolved by gene duplication after species divergence. Furthermore, the OvoD genes in each species trend to be clustered densely in a syntenic region flanked by the XKR6 and MTMR9 genes, indicating that they are of monophyletic origin and appear to have emerged via independent gene duplication events in snakes, turtles, crocodiles, birds and the green lizard. Furthermore, positive selection sites are located primarily in the mature peptide region of the turtle, lizard and snake OvoD genes. Moreover, the duplicate OvoDAs in birds seem to be maintained in almost identical sequences and functions by strong purifying selection. Genome-wide identification and analyses of the OvoD gene family may greatly improve our understanding of the potential evolutionary relationship scenario of the OvoD gene family. Continued sequence mining and functional studies of OvoDs will be helpful in shedding light on the relationships between OvoDs and other defensin-related gene families.
A novel locus for generalized epilepsy with febrile seizures plus in French families
ARCHIVES OF NEUROLOGY
Authors: Baulac, Stephanie; Gourfinkel-An, Isabelle; Couarch, Philippe; Depienne, Christel; Kaminska, Anna; Dulac, Olivier; Baulac, Michel; LeGuern, Eric; Nabbout, Rima
Abstract
Background: Generalized epilepsy with febrile seizures plus ( GEFS(+)) is a familial autosomal dominant entity characterized by the association of febrile and afebrile seizures. Mutations in 3 genes - the sodium channel alpha 1 subunit gene ( SCN1A), the sodium channel beta 1 subunit gene ( SCN1B), and the gamma 2 GABA receptor subunit gene ( GABRG2) - and linkage to 2 other loci on 2p24 and 21q22 have been identified in families with GEFS(+), indicating genetic heterogeneity. Objectives: To localize by means of linkage analysis a new gene for GEFS(+) in a large family with 11 affected members and to test the new locus in 4 additional families with GEFS(+). Design: Family- based linkage analysis. Setting: University hospital. Patients: Five French families with GEFS(+) and at least 7 available affectedmemberswith autosomaldominanttransmission. All the patients had febrile seizures and/or afebrile generalized tonic-clonic seizures or absence epilepsy. Main Outcome Measures: We analyzed 380 microsatellite markers and conducted linkage analysis. Results: In the largest family, a 10-cM-density genomewide scan revealed linkage to a 13-Mb (megabase) interval on chromosome 8p23-p21 with a maximum pairwise logarithm of odds ( LOD) score of 3.00 ( at Theta= 0) for markers D8S351 and D8S550 and a multipoint LOD score of 3.23. A second family with GEFS(+) was also possibly linked to chromosome 8p23-p21 and the region was narrowed to a 7.3- Mb candidate interval, flanked by markers D8S1706 and D8S549. We have not, so far, identified mutations in the coding exons of 6 candidate genes ( MTMR9, MTMR7, CTSB, SGCZ, SG223, and ATP6V1B2) located in the genetic interval. Conclusions: Wereport a sixth locus for GEFS(+) on chromosome 8p23- p21. Because no ion channel genes are located in this interval, identification of the responsible gene will probably uncover a new mechanism of pathogenesis for GEFS(+).