Anti-tumor necrosis factor (TNF) therapy is used for the induction and maintenance of remission in Crohn's disease (CD) patients. However, primary nonresponders to initial treatment constitute 20%-40% of cases. The causes of this phenomenon are still unknown. In this study, we aimed to determine the genetic predictors of the variable reactions of CD patients to anti-TNF therapy. Using long-range PCR libraries and the next-generation sequencing (NGS) method, we performed broad pharmacogenetic studies including a panel of 23 genes (TNFRSF1A,TNFRSF1B,CASP9,FCGR3A,LTA,TNF,FAS,ADAM17,IL17A,IL6,MMP1,MMP3,S100A8,S100A9,S100A12,TLR2,TLR4,TLR9,CD14,IL23R,IL23,IL1R, andIL1B) in a group of 107 diagnosed and clinically characterized CD patients following anti-TNF therapy. In the studied group, we indicated, in total, 598 single nucleotide variants for all analyzed genomic targets. Twelve patients (11.2%) did not respond to the induction therapy, which was associated with alleles in 11locilocated inFCGR3A(rs7539036, rs6672453, rs373184583, and rs12128686),IL1R(rs2041747),TNFRSF1B(rs5746053),IL1B(rs1071676, rs1143639, rs1143637, and rs1143634), andFAS(rs7896789) genes. After multiple comparison corrections, the results were not statistically significant, however for nonresponders the alleles distribution for thoselocipresented large differences and specified scheme compared to responders and populations. These findings require further investigation in an independent larger cohort before introducing them for a clinical setting, however, we identified an interesting direction. Polymorphism of theFCGR3A,IL1R,TNFRSF1B,IL1B, andFASgenes could be a predictor of the primary response to anti-TNF therapy in CD patients.