Identification of novel genes in testicular cancer microenvironment based on ESTIMATE algorithm-derived immune scores
JOURNAL OF CELLULAR PHYSIOLOGY
Authors: Ke, Zhi-Bin; Wu, Yu-Peng; Huang, Peng; Hou, Jian; Chen, Ye-Hui; Dong, Ru-Nan; Lin, Fei; Wei, Yong; Xue, Xue-Yi; Ng, Chi-Fai; Xu, Ning
Abstract
Testicular cancer is the most common solid malignancy among young men. We downloaded data of testicular cancer patients from The Cancer Genome Atlas database to find novel genes in the testicular cancer microenviroment based on ESTIMATE algorithm-derived immune scores. A total of 156 cases of testicular cancer were included in this study and 165 cases of normal testicular tissues were used. We divided the testicular cancer patients into high- and low-score groups based on their immune scores. We identified 1,226 differentially expressed genes (fold change > 2, false discovery rate < 0.05), including 688 downregulated genes and 538 upregulated genes, between these two groups. The top Gene Ontology terms were involved in the immune response-regulating cell surface receptor signaling pathway, immune response-activating cell surface receptor signaling pathway, external side of the plasma membrane, and receptor ligand activity. By performing the Kyoto Encyclopedia of Genes and Genomes analysis, we demonstrated that cAMP signaling pathway was highly enriched among these differentially expressed genes. High expression of LINC01564, LINC02208, ODAM, RNA5SP111, and RNU6-196P were found to be associated with poor overall survival. The expression of genes was further validated by the Human Protein Atlas and only ALB and IFNG were demonstrated to be differentially expressed between testis tissue and testicular cancer tissue.
Analysis of spontaneous resolution of cytomegalovirus replication after transplantation in CMV-seropositive patients with pretransplant CD8+IFNG + response
ANTIVIRAL RESEARCH
Authors: Paez-Vega, Aurora; Poyato, Antonio; Rodriguez-Benot, Alberto; Guirado, Lluis; Fortun, Jesus; Len, Oscar; Abdala, Edson; Farinas, Maria C.; Cordero, Elisa; de Gracia, Carmen; Hernandez, Domingo; Gonzalez, Rafael; Torre-Cisneros, Julian; Cantisan, Sara
Abstract
This prospective study evaluates whether CMV-seropositive (R +) transplant patients with pretransplant CD8 + IFNG + T-cell response to cytomegalovirus (CMV) (CD8 + IFNG + response) can spontaneously clear the CMV viral load without requiring treatment. A total of 104 transplant patients (kidney/liver) with pretransplant CD8 +1FNG + response were evaluable. This response was determined using QuantiFERON-CMV assay. The incidence of CMV replication and disease was 45.2% (47/104) and 6.7% (7/104), respectively. Of the total patients, 77.9% (81/104) did not require antiviral treatment, either because they did not have CMV replication (n = 57) or because they had asymptomatic CMV replication that could be spontaneously cleared (n = 24). Both situations are likely related to the presence of COB + IFNG + response to CMV, which has a key role in controlling CMV infection. However, 22.1% of the patients (23/104) received antiviral treatment, although only 7 of them did so because they had symptomatic CMV replication. These patients developed symptoms in spite of having pretransplant CD8 + IFNG + response, thus suggesting that other immunological parameters might be involved, such as a dysfunctional CD4+ response or that they might have become QFNon-reactive due to the immunosuppression. In conclusion, around 80% of R + patients with pretransplant CD8 + IFNG + response to CMV did not require antiviral treatment, although this percentage might be underestimated. Nevertheless, other strategies such as performing an additional CD8 + IFNG + response determination at posttransplant time might provide more reliable information regarding the patients who will be able to spontaneously clear the viremia.