Search for Specific Biomarkers of IFN beta Bioactivity in Patients with Multiple Sclerosis
PLOS ONE
Authors: Malhotra, Sunny; Bustamante, Marta F.; Miralles, Francisco; Rio, Jordi; Carmen Ruiz de Villa, Mari; Vegas, Esteban; Nonell, Lara; Deisenhammer, Florian; Fissolo, Nicolas; Nurtdinov, Ramil N.; Montalban, Xavier; Comabella, Manuel
Abstract
Myxovirus A (MxA), a protein encoded by the MX1 gene with antiviral activity, has proven to be a sensitive measure of IFN beta bioactivity in multiple sclerosis (MS). However, the use of MxA as a biomarker of IFN beta bioactivity has been criticized for the lack of evidence of its role on disease pathogenesis and the clinical response to IFN beta. Here, we aimed to identify specific biomarkers of IFN beta bioactivity in order to compare their gene expression induction by type I IFNs with the MxA, and to investigate their potential role in MS pathogenesis. Gene expression microarrays were performed in PBMC from MS patients who developed neutralizing antibodies (NAB) to IFN beta at 12 and/or 24 months of treatment and patients who remained NAB negative. Nine genes followed patterns in gene expression over time similar to the MX1, which was considered the gold standard gene, and were selected for further experiments: IFI6, IFI27, IFI44L, IFIT1, HERC5, LY6E, RSAD2, SIGLEC1, and USP18. In vitro experiments in PBMC from healthy controls revealed specific induction of selected biomarkers by IFN beta but not IFN gamma, and several markers, in particular USP18 and HERC5, were shown to be significantly induced at lower IFN beta concentrations and more selective than the MX1 as biomarkers of IFN beta bioactivity. In addition, USP18 expression was deficient in MS patients compared with healthy controls (p = 0.0004). We propose specific biomarkers that may be considered in addition to the MxA to evaluate IFN beta bioactivity, and to further explore their implication in MS pathogenesis.
CD14, a key candidate gene associated with a specific immune response to cockroach
CLINICAL AND EXPERIMENTAL ALLERGY
Authors: Gao, P.; Grigoryev, D. N.; Rafaels, N. M.; Mu, D.; Wright, J. M.; Cheadle, C.; Togias, A.; Beaty, T. H.; Mathias, R. A.; Schroeder, J. T.; Barnes, K. C.
Abstract
Background Sensitization to cockroach allergen is one of the strongest predictors of asthma morbidity, especially among African Americans. Objective Our aims were to determine the genomic basis of cockroach sensitization and the specific response to cockroach antigen. Methods We investigated the Th1/Th2 cytokine profile of co-cultured plasmacytoid dendritic cells (pDCs) and CD4(+) T cells and the 'transcript signature' of the immune response to cockroach antigen using high-throughput expression profiling of co-cultured cells. Results We observed significantly elevated levels of IL-13, IL-10, and TNF-alpha, but undetectable levels of IL-12p70 and IFN-alpha, when cultures were exposed to crude cockroach antigen. A significant difference was observed for IL-13 between cockroach-allergic and non-allergic individuals (P = 0.039). Microarray analyses demonstrated a greater response at 48 h compared with 4 h, with 50 genes being uniquely expressed in cockroach antigen-treated cells, including CD14, S100A8, CCL8, and IFI44L. The increased CD14 expression was further observed in purified pDCs, human monocytic THP-1 cells, and the supernatant of co-cultured pDCs and CD4(+) T cells on exposure to cockroach extract. Furthermore, the most differential expression of CD14 between cockroach allergy and non-cockroach allergy was only observed among individuals with the CC 'high-risk' genotype of the CD14-260C/T. Ingenuity Pathways Analysis analyses suggested the IFN signalling as the most significant canonical pathway. Conclusion Our results suggest that these differentially expressed genes, particularly CD14, and genes in the IFN signalling pathway may be important candidates for further investigation of their role in the immune response to cockroach allergen.