Association study of genetic variants in PLA2G4A, PLCG1, LAT, SYK, and TNFRS11A genes in NSAIDs-induced urticaria and/or angioedema patients
PHARMACOGENETICS AND GENOMICS
Authors: Ayuso, Pedro; Plaza-Seron, Maria del Carmen; Dona, Inmaculada; Blanca-Lopez, Natalia; Campo, Paloma; Cornejo-Garcia, Jose A.; Perkins, James R.; Torres, Maria J.; Blanca, Miguel; Canto, Gabriela
Abstract
NSAIDs-induced urticaria and/or angioedema (NIUA) is the most frequent entity of hypersensitivity reactions to NSAIDs. The underlying cause is considered to be because of a nonspecific immunological mechanism in which mast cells are key players. We studied the association of nine single nucleotide polymorphisms in five genes involved in mast cell activation (SYK, LAT1, PLCG1, PLA2G4A, and TNFRSF11A) in 450 NIUA patients and 500 controls. We identified several statistically significant associations when stratifying patients by symptoms: PLA2G4A rs12746200 (urticaria vs. controls, P-c=0.005). PLCG1 rs2228246 (angioedema vs. controls; P-c=0.044), and TNFRS11A rs1805034 (urticaria+angioedema vs. controls; P-c=0.041). The frequency of haplotype PLCG1 rs753381-rs2228246 (C-G) in angioedema-NIUA patients was lower than that in controls (P-c=0.040). In addition, the haplotype frequency of TNFRS11A rs1805034-rs35211496 (C-T) was higher among urticaria-NIUA and urticaria+angioedema-NIUA patients than the controls (P-c=0.045 and 0.046). Our results shed light on the involvement of variants in genes related to non-immunological mast cell activation in NIUA. Copyright (C) 2015 Wolters Kluwer Health, Inc. All rights reserved.
Six novel susceptibility loci for coronary artery disease and cerebral infarction identified by longitudinal exome-wide association studies in a Japanese population
BIOMEDICAL REPORTS
Authors: Yasukochi, Yoshiki; Sakuma-, Jun; Takeuchi, Ichiro; Kato, Kimihiko; Oguri, Mitsutoshi; Fujimaki, Tetsuo; Horibe, Hideki; Yamada, Yoshiji
Abstract
Coronary artery disease (CAD) and cerebral infarction (CI) remain major causes of morbidity and mortality in humans. Recent genome-wide association studies have identified various genetic variants associated with these diseases. However, these studies were commonly conducted in a cross-sectional manner. Therefore, the present research performed longitudinal exome-wide association studies for CAD and CI using data on similar to 244,000 genotyped variants and the clinical data of 6,026 Japanese individuals who had attended annual health checkups for several years (mean followed-up period, 5 +/- 3 years). Following quality controls, the significance [false discovery rate (FDR) of <0.05] of association of the diseases with 24,651 single nucleotide polymorphisms (SNPs) in 5,989 individuals for three inheritance models was tested using the generalized estimating equation model. SNPs that reached statistical significance were further screened against a threshold of approxdf (a scale of small effective sample size) of >30. The longitudinal exome-wide association studies revealed that three SNPs [rs4606855 of ADGRE3 (P=2.5x10(-6); FDR=0.031; approxdf=71), rs3746414 of ZFP64 (P=5.9x10(-6); FDR=0.048; approxdf=93) and rs7132908 of FAIM2 (P< 2.0x10(-16); FDR< 4.9x10(-12); approxdf=65)] were significantly associated with the prevalence of CAD. A different set of three SNPs [rs6580741 of FAM186A (P< 2.0x10(-16); FDR< 4.9x10(-12); approxdf=48), rs1324015 of LINC00400 (P< 2.0x10(-16); FDR< 4.9x10(-12); approxdf=49) and rs884205 of TNFRSF11A (P< 2.0x10(-16); FDR< 4.9x10(-12); approxdf=32)] was significantly associated with CI. The comparison of disease incidence with these SNPs demonstrated that all the minor alleles were associated with decreased susceptibility to CAD or CI. In conclusion, six novel SNPs were identified as susceptibility loci for CAD (rs4606855 of ADGRE3, rs3746414 of ZFP64, and rs7132908 of FAIM2) or CI (rs6580741 of FAM186A, rs1324015 of LINC00400, and rs884205 of TNFRSF11A).