Novel variants of human IFN-alpha detected in tumor cell lines and biopsy specimens
JOURNAL OF INTERFERON AND CYTOKINE RESEARCH
Authors: Golovleva, I; Biasotto, M; Verpy, E; Roos, G; Meo, T; Tosi, M; Lundgren, E
Abstract
Interferon-alpha constitutes a complex gene family with 14 genes clustered on the short arm of chromosome 9. More than 50 sequence variants have been described, However, an extensive genetic polymorphism has not been seen in the few population studies reported so far, As many of the sequence variants reported were derived from tumor cell lines, we have investigated whether IFN-alpha genes are unstable in tumor cells, Using fluorescence-assisted mismatch analysis (FAMA), combined with allele-specific primer extension, RFLP analysis, and direct sequencing, we detected in a panel of 14 tumor cell lines two new sequence variants of the IFNA1 and IFNA13 genes, Further two-paint mutations were found in tumor samples from leukemias (n = 10) and renal cell carcinomas (n = 17) not seen in normal tissues, In the IFNA17 gene, three new sequence variants were detected, one in a tumor cell line and two in tumor biopsy specimens, Besides these individual point mutations, two new polymorphisms were found in each of the IFNA13 and IFNA17 genes, No new variants were found in the IFNA2 and IFNA10 genes, The results suggest that new sequence variants of the IFN-alpha genes occur relatively frequently in tumors or in tumor cell lines.
A guinea pig IFNA1 gene with antiviral activity against human influenza virus infection
FRONTIERS IN BIOSCIENCE-LANDMARK
Authors: Jiang, Shiwen; Sakamoto, Ryou; Kimura, Tominori
Abstract
We previously reported a natural antisense (AS) RNA as an important modulator of human interferon-Alpha1 (IFNA1) mRNA levels. Here, we identified the guinea pig (Cavia porcellus) IFNA1 gene to enable a proof-of-concept experiment to be performed to confirm that the AS-mRNA regulatory axis exerts in vivo control over innate immunity. We selected a guinea pig model system for influenza virus infection because guinea pigs encode a functional M x 1 gene, an important anti-viral effector in the type I interferon pathway. We identified 15 guinea pig IFNA1 gene candidates upon bioinformatic analysis and selected the three candidates with the highest sequence homology to Homo sapiens, Mus musculus and Marmota himalayana IFNA1. The anti-viral activity of guinea pig IFN-Alphal protein against influenza virus A/Puerto Rico/8/34- or endomyocarditis virus-infection was then determined for the three gene candidates. We identified cpIFNA1 as the candidate with the highest sequence homologies and best anti-viral effects. cpIFNA1 will enable us to perform a proof-of-concept experiment to verify that IFN-Alphal AS increases cpIFNA1 mRNA levels, resulting in inhibition of influenza virus proliferation in vivo.