YIELD OPTIMISATION AND MOLECULAR CHARACTERISATION OF UNCULTURED CD271(+) MESENCHYMAL STEM CELLS IN THE REAMER IRRIGATOR ASPIRATOR WASTE BAG
EUROPEAN CELLS & MATERIALS
Authors: Churchman, Sarah M.; Kouroupis, Dimitrios; Boxall, Sally A.; Roshdy, Tarek; Tan, Hiang B.; McGonagle, Dennis; Giannoudis, Peter V.; Jones, Elena A.
Abstract
Bone reconstruction requires the use of autografts from patients' iliac crest (IC); for large-volume defects bone void fillers and autologous mesenchymal stem cells (MSCs) are often added. The Reamer/Irrigator/Aspirator (RIA) device provides the means of harvesting large amounts of autograft and additionally yields a waste bag containing MSCs, which is currently discarded. The aim of this study was to enumerate and characterise native MSCs from RIA waste bag and compare them to 'gold-standard' donormatched MSCs from IC bone marrow (BM). IC-BM from age matched trauma patients was used as control. In RIA waste bags the median MSC yield established using a colony-forming fibroblast assay was 314333 (range 5 x 10(4)-1.4 x 10(6)), equivalent to approximately one litre of IC-BM aspirate. CD271(+) cells were present at high levels in RIA waste bags, had MSC surface phenotype (CD90(+) CD73(+) CD105(+) CD34-CD61-CD19-CD31-CD33(-)) and expressed genes associated with multipotentiality, osteogenesis, adipogenesis and angiogenic support. RIACD271(+) MSCs were transcriptionally similar to donormatched IC-CD271(+) MSCs (76 % transcripts); with the majority of bone-related and Wnt pathway molecules being expressed at comparable levels. Lower-level expression of MCAM/CD146 and 5/13 hypoxia-related molecules was found in RIA-CD271(+) MSCs, potentially reflecting their native residence in a more hypoxic environment of the endosteum and bone cortex. These data suggest that long bones contain very large numbers of MSCs, transcriptionally-similar to IC-BM MSCs; they can be procured by reaming using the RIA device and used, following concentration, as autologous and potentially allogeneic bone repair therapy.
High-throughput methylation profiling by MCA coupled to CpG island microarray
GENOME RESEARCH
Authors: Estecio, Marcos R. H.; Yan, Pearlly S.; Ibrahim, Ashraf E. K.; Tellez, Carmen S.; Shen, Lanlan; Huang, Tim H-M; Issa, Jean-Pierre J.
Abstract
An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms. The lack of high- throughput methods with high specificity and sensitivity to detect changes in DNA methylation has limited its application for clinical profiling. Here we overcome this limitation and present an improved method to identify methylated genes genome- wide by hybridizing a CpG island microarray with amplicons obtained by the methylated CpG island amplification technique ( MCAM). We validated this method in three cancer cell lines and 15 primary colorectal tumors, resulting in the discovery of hundreds of new methylated genes in cancer. The sensitivity and specificity of the method to detect hypermethylated loci were 88% and 96%, respectively, according to validation by bisulfite- PCR. Unsupervised hierarchical clustering segregated the tumors into the expected subgroups based on CpG island methylator phenotype classification. In summary, MCAM is a suitable technique to discover methylated genes and to profile methylation changes in clinical samples in a high- throughput fashion.