Context-specific functional effects of IFNGR1 promoter polymorphism
HUMAN MOLECULAR GENETICS
Authors: Koch, O; Kwiatkowski, DP; Udalova, IA
Abstract
We report evidence of a polymorphism in the promoter region of IFNGR1 (encoding interferon-gamma receptor 1) that has opposite functional effects in different cellular contexts. It is a deletion/insertion polymorphism that is found in Africans but not Europeans or Asians, and has been associated with resistance to severe malaria. We find that the IFNGR1-470del allele acts to suppress binding of nuclear proteins to the IFNGR1 promoter region in a manner that is specific for cell type. In B-lymphocytes, the IFNGR1-470del allele suppresses the binding of a similar to 35 kDa nuclear protein and acts to increase reporter gene expression. In epithelial cells, the same allele acts to decrease gene expression and suppresses the binding of similar to 90 kDa STAT-1 and STAT-2 proteins. In T-lymphocytes, this allele causes only subtle differences in nuclear protein binding and has no significant effect on gene expression. These findings suggest a mechanism by which a single genetic variant may cause a broad range of phenotypic consequences.
Impact of molecular diagnosis on treating Mendelian susceptibility to mycobacterial diseases
JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION
Authors: Wang, Li-Hui; Yen, Chia-Liang; Chang, Tsung-Chain; Liu, Ching-Chuan; Shieh, Chi-Chang
Abstract
Background/Objective: The IL-12 IFN-gamma axis is critical for immune defense against mycobacterial infections. Inherited mutations that affect normal activation of this self-amplifying cytokine reaction lead to increased chances of mycobacterial infections, known as Mendelian susceptibility to mycobacterial diseases (MSMD). Delayed diagnosis and difficulty in identifying pathogenic mycobacteria hinder proper treatment of patients, so the aim of this study was to facilitate the diagnosis of mycobacterial infections in MSMD patients using an oligonucleotide array method. Methods: Peripheral blood mononuclear cells (PBMCs) were isolated from three MSMD patients in the same family. A series of immunologic studies, including testing for cytokine secretion after leukocyte stimulation, cell-surface marker analysis, and cDNA sequencing, were then performed. An oligonucleotide array was used to rapidly identify pathogens. Results: Cytokine secretion testing showed normal IFN-gamma secretion after IL-12 stimulation but low IL-12 secretion after IFN-gamma stimulation, which indicates a defect in the IFN-gamma receptor or its intracellular signaling. Cell-surface receptor analysis showed IFN-gamma receptor 1 overexpression, suggesting an autosomal dominant IFN-gamma receptor 1 deficiency. cDNA sequencing identified the IFNGR1 818del4 mutation in three members of the family with known MSMD, and an oligonucleotide array identified Mycobacterium tuberculosis complex and Mycobacterium abscessus as pathogens. Conclusions: Patients with suspected MSMD should undergo molecular diagnosis of the primary immunodeficiency. Oligonucleotide array methods may be a tool for rapid identification of pathogens and for guiding antimicrobial treatment in immunodeficient patients. Copyright (c) 2012, Taiwan Society of Microbiology. Published by Elsevier Taiwan LLC. All rights reserved.