Array comparative genomic hybridization (aCGH) reveals the largest novel deletion in PCCA found in a Saudi family with propionic acidemia
EUROPEAN JOURNAL OF MEDICAL GENETICS
Authors: Kaya, Namik; Al-Owain, Mohammad; AlBakheet, AlBandary; Colak, Dilek; Al-Odaib, Ali; Imtiaz, Faiqa; Coskun, Serdar; Al-Sayed, Moeenaldeen; Al-Hassnan, Zuhair; Al-Zaidan, Hamad; Meyer, Brian; Ozand, Pinar
Abstract
Propionic acidemia is a metabolic disorder (OMIM 606054) caused by deficiency of the propionyl-coenzyme A (CoA) carboxylase, which subsequently results in accumulation of propionic acid. Patients may initially present with poor feeding, vomiting, loss of appetite, hypotonia, and lethargy. Later, most children will show different degrees of motor, social and language delay even more serious medical problems, including heart abnormalities, seizures, coma, and possibly death. Two siblings affected with propionic acidemia were screened for putative mutations in PCCA and PCCB genes coding alpha and beta subunits of propionyl-coenzyme A (CoA) carboxylase, respectively. Both patients had a mild-severe form of propionic acidemia . The investigations using PCR, long-PCR, array comparative genomic hybridization (aCGH), and sequencing techniques showed a similar to 73 kb deletion extending from intron 16 to intron 19 and an 18 bp insertion at the distal end of the deletion in PCCA gene. The deletion so far is the largest gross change reported in the literature for the PCCA gene. (C) 2008 Elsevier Masson SAS. All rights reserved.
Comparative mapping between human chromosome 3 and porcine chromosome 13
CYTOGENETICS AND CELL GENETICS
Authors: Van Poucke, M; Tornsten, A; Mattheeuws, M; Van Zeveren, A; Peelman, LJ; Chowdhary, BP
Abstract
Zoo-FISH and somatic cell hybrid panels have earlier demonstrated extended synteny conservation between human chromosome 3 (HSA3) and pig chromosome 13 (SSC 13). In the present study, eight human genes viz., ADCY5, CASR, COL7A1, COL8A1, ITIH1, RHO, SIAT1 and XPC, spread along the length of HSA3, were chosen for expanding the comparative map between the two chromosomes. Using human and rat cDNAs, or human- and porcine-specific PCR products as probes, 8 porcine lambda clones were isolated. After subcloning and partial sequence determination, identity of the clones with regards to the specific genes was established. The eight type 1 markers thus obtained were biotin labeled and FISH mapped to pig metaphase spreads. All lambda clones localized to SSC13. In combination with the hitherto published mapping data of coding sequences on SSC13, a preliminary comparative status depicting the relative organization of this chromosome with respect to HSA3 was developed. The comparative map thus obtained bears significance in searching for candidate genes of economically important traits mapped to SSC13.