Association of GA genotype of SNP rs4680 in COMT gene with psoriasis
ARCHIVES OF DERMATOLOGICAL RESEARCH
Authors: Sobolev, Vladimir; Sakaniya, Luiza; Tretiakov, Artemii; Kokaeva, Zarema; Naumova, Elena; Rudko, Olga; Soboleva, Anna; Danilin, Ivan; Korsunskaya, Irina; Klimov, Eugene
Abstract
Psoriasis is a multigene and multifactorial skin disease with heterogeneous genetic inheritance. Mental disorders participate in the development of psoriasis as predisposing factors; a correlation of dermatological diseases with pathological anxiety and stress was shown. Meanwhile, there are no studies describing molecular mechanisms of the linkages between psycho-emotional disorders and skin diseases. The aim of this study is to find the associations between SNP in genes COMT (rs4680), DBH (rs141116007), CCKAR (rs1800857) and CCKBR (rs1805002), and psoriasis. Patients were selected according to the 10th revision of International Classification of Diseases (L-40). The sample size was 88 patients. The size of the control sample (population control) was 365 people. Genotyping was performed using PCR-RFLP and real-time PCR. Statistical analysis was performed using WinPepi software. Identification of complex genotypes was performed by the Monte Carlo method using APSampler 3.6.1 algorithm. Among the studied genes, only GA genotype of COMT gene is significantly associated with psoriasis [chi(2) = 19.163 (p = 1.3E-5), F (p) = 1.2E-5, OR 3.47 (CI 99% = 1.61-7.91)]. At the moment, the functional significance of this phenomenon is difficult to explain.
Advanced qRT-PCR technology allows detection of the cholecystokinin 1 receptor (CCK1R) expression in human pancreas
PANCREAS
Authors: Galindo, J; Jones, N; Powell, GL; Hollingsworth, SJ; Shankley, N
Abstract
Objectives: To help clarify the controversy over the detection of expression of the cholecystokinin 1 receptor (CCK1R; CCKAR) in human pancreas. Methods: Applied qRT-PCR to detect CCK1R expression using the SYBR(TM) green/Smart Cycler(R) II and the QZyme(TM) oligonucleotide/ ABI PRISM 7500(TM) systems to detect CCK1R expressed message in highly purified cDNAs from human pancreas and other tissues. Samples of normal pancreas were obtained at operation (pancreaticoduodenectomy; Whipple's procedure) and used to ascertain the expression of CCK1R in human tissue and investigate donor individual variability in expression levels by semi-quantitative RT-PCR and scanning densitometry. Results: We present molecular evidence obtained with advanced qRT-PCR technology that clearly establishes CCK1R expression in human pancreas. Amplification variation in individual human samples is documented here. By targeting different stretches of the sequence with several primer pairs, it was observed that SYBR TM green qRT-PCR failed to amplify efficiently over GGA- and GAA-rich nucleotide triplet regions, leading to false negative results. The QZyme TM system quantified the expression with the following distribution: stomach > small intestine similar to colon > brain similar to kidney > pancreas. CCK1R expression levels varied from undetectable, to high levels of expression, in individual samples collected from surgical specimens. Conclusion: CCK1R message can be conclusively detected and quantified in human pancreas cDNA by targeting the appropriate nucleotide sequence regions of this gene.