Association of Systemic Lupus Erythematosus Susceptibility Genes with IgA Nephropathy in a Chinese Cohort
CLINICAL JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
Authors: Zhou, Xu-Jie; Cheng, Fa-Juan; Zhu, Li; Lv, Ji-Cheng; Qi, Yuan-Yuan; Hou, Ping; Zhang, Hong
Abstract
Background and objectivesOne hypothesis states that IgA nephropathy (IgAN) is a syndrome with an autoimmune component. Recent studies strongly support the notion of shared genetics between immune-related diseases. This study investigated single-nucleotide polymorphisms (SNPs) reported to be associated with systemic lupus erythematosus (SLE) in a Chinese cohort of patients with IgAN and in controls.Design, setting, participants, & measurementsThis study investigated whether SNP markers that had been reported to be associated with SLE were also associated with IgAN in a Chinese population. The study cohort consisted of 1194 patients with IgAN and 902 controls enrolled in Peking University First Hospital from 1997 to 2008.ResultsNinety-six SNPs mapping to 60 SLE loci with reported P values <1x10(-5) were investigated. CFH (P=8.41x10(-6)), HLA-DRA (P=4.91x10(-6)), HLA-DRB1 (P=9.46x10(-9)), PXK (P=3.62x10(-4)), BLK (P=9.32x10(-3)), and UBE2L3 (P=4.07x10(-3)) were identified as shared genes between IgAN and SLE. All associations reported herein were corroborated by associations at neighboring SNPs. Many of the alleles that are risk alleles for SLE are protective alleles for IgAN. By analyses of two open independent expression quantitative trait loci (eQTL) databases, correlations between genotypes and corresponding gene expression were observed (P<0.05 in multiple populations), suggesting a cis-eQTL effect. From gene-expression databases, differential expressions of these genes were observed in IgAN. Additive interactions between PXK rs6445961and HLA-DRA rs9501626 (P=1.51x10(-2)), as well as multiplicative interactions between CFH rs6677604 and HLA-DRB1 rs9271366 (P=1.77x10(-2)), and between HLA-DRA rs9501626 and HLA-DRB1 rs9271366 (P=3.23x10(-2)) were observed. Disease risk decreased with accumulation of protective alleles. Network analyses highlighted four pathways: MHC class II antigen presentation, complement regulation, signaling by the B-cell receptor, and ubiquitin/proteasome-dependent degradation.ConclusionFrom this systems genetics perspective, these data provide important clues for future studies on pleiotropy in IgAN and lupus nephritis.
Association analysis of PARK16-18 variants and Parkinson's disease in a Chinese population
JOURNAL OF CLINICAL NEUROSCIENCE
Authors: Zhou, Li-Li; Zhang, Xiong; Bao, Qiong-Qiong; Liu, Rong-Pei; Gong, Mei-Ying; Mao, Guang-Yun; Zou, Ming; Zhu, Jian-Hong
Abstract
Genome-wide association studies identified PARK16 variants rs823128 and rs947211, PARK17/GAK rs11248051 and PARK18/HLA-DRA rs3129882 as risk factors for Parkinson's disease (PD). However the susceptibility of these loci to predisposing individuals for PD, particularly rs11248051, remains under investigation in Chinese populations. A total of 323 PD patients and 345 age and sex matched controls were recruited in eastern China. Our results show that minor allele frequencies of rs11248051 (odds ratio [OR] 1.522; p=0.016) and rs3129882 (OR 1.294; p=0.03), but not rs823128 and rs947211, were associated with risk for PD. Genetic interaction analysis revealed that subjects simultaneously carrying the T allele (TC or TT) of rs11248051 and the A allele (AG or AA) of rs3129882 had an aggravated risk (OR 1.91; p=0.016) of PD. However, rs11248051 or rs3129882 displayed no association with PD phenotypes or clinical scores. Our results suggest that rs11248051 and rs3129882 are risk factors for sporadic PD in a Chinese population, and their genetic interplay contributes to an elevated risk for PD predisposition. Our data provide a novel insight and further information regarding PARK16-1 8 loci in PD susceptibility. (C) 2013 Elsevier Ltd. All rights reserved.