A post-genome-wide association study validating the association of the glycophorin C gene with serum hemoglobin level in pig
ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES
Authors: Liu, Yang; Hu, Zhengzheng; Yang, Chen; Wang, Shiwei; Wang, Wenwen; Zhang, Qin
Abstract
Objective: This study aimed to validate the statistical evidence from the genome-wide association study (GWAS) as true-positive and to better understand the effects of the glycophorin C (GYPC) gene on serum hemoglobin traits. Methods: Our initial GWAS revealed the presence of two single nucleotide polymorphisms (SNPs) (ASGA0069038 and ALGA0084612) for the hemoglobin concentration trait (HGB) in the 2.48 Mb region of SSC15. From this target region, GYPC was selected as a promising gene that associated with serum HGB traits in pigs. SNPs within the GYPC gene were detected by sequencing. Thereafter, we performed association analysis of the variant with the serum hemoglobin level in three pig populations. Results: We identified one SNP (g.29625094 T>C) in exon 3 of the GYPC gene. Statistical analysis showed a significant association of the SNP with the serum hemoglobin level on day 20 (p<0.05). By quantitative real-time polymerase chain reaction, the GYPC gene was expressed in eight different tissues. Conclusion: These results might improve our understanding of GYPC function and provide evidence for its association with serum hemoglobin traits in the pig. These results also indicate that the GYPC gene might serve as a useful marker in pig breeding programs.
Improving durum wheat (Triticum turgidum L. var durum) grain yellow pigment content through plant breeding
CIENCIA E INVESTIGACION AGRARIA
Authors: Schulthess, Albert; Schwember, Andres R.
Abstract
Wheat grain yellow pigment content (GYPC) is an important trait that determines pasta quality. The main objective of this review is to examine the genetics regulating GYPC to enhance it through breeding, leading to improved pasta quality. Although GYPC is a polygenic trait, its high heritability has facilitated breeding internationally. GYPC is influenced by one or two major loci with additive effects plus several minor genes, and there is evidence showing that the phytoene synthase loci PSY1A and PSY1B are strong candidate genes that regulate GYPC. Nine Chilean durum wheat (Triticum turgidum L. var. durum) genotypes showed intermediate to low levels of GYPC based upon both phenotypic and genotypic data. The next step is to improve GYPC in those materials by introgressing the high-yellowness PSY1 allelic variants (i.e., the PSY1Ao allele and the PSY1Bb allele) using plant breeding strategies such as backcrossing and marker-assisted selection.