Mosaic genealogy of the Mus musculus genome revealed by 21 nuclear genes from its three subspecies
GENES & GENETIC SYSTEMS
Authors: Liu, Yu-Hua; Takahashi, Aya; Kitano, Takashi; Koide, Tsuyoshi; Shiroishi, Toshihiko; Moriwaki, Kazuo; Saitou, Naruya
Abstract
Patterns of genetic variation provide insight into the evolutionary history of a species. Mouse (Mus musculus) is a good model for this purpose. Here we present the analysis of genealogies of the 21 nuclear loci and one mitochondrial DNA region in M. musculus based on our nucleotide sequences of nine inbred strains from three M. musculus subspecies (musculus, domesticus, and castaneus) and one M. spicilegus strain as an outgroup. The mitochondrial DNA gene genealogy of those strains confirmed the introgression pattern of one musculus strain. V hen all the nuclear DNA data were concatenated to produce a phylogenetic tree of nine strains, musculus and domesticus strains formed monophyletic clusters with each other, while the two castaneus strains were paraphyletic. When each DNA region was treated independently, the phylogenetic networks revealed an unnegligibly high level of subspecies admixture and the mosaic nature of their genome. Estimation of ancestral and derived population sizes and migration rates suggests the effects of ancestral polymorphism and gene flow on the pattern of genetic variation of the current subspecies. Gene genealogies of Fut4 and Dfy loci also suggested existence of the gene flow between M. musculus and M. spicilegus or other distant species.
alpha 1,3-fucosyltransferase IX (Fut9) determines Lewis X expression in brain
GLYCOBIOLOGY
Authors: Nishihara, S; Iwasaki, H; Nakajima, K; Togayachi, A; Ikehara, Y; Kudo, T; Kushi, Y; Furuya, A; Shitara, K; Narimatsu, H
Abstract
The expression of the Lewis X (Le(x)) carbohydrate structure in brain is developmentally regulated and is thought to play a role in cell-cell interaction during neuronal development. Mice possess three functional alpha1,3-fucosyltransferase genes: Fut4, Fut7, and Fut9. Fut7 is known to have no activity to synthesize Le(x). In the present study, the relative activities of Fut4 and Fut9 for Le(x) synthesis were determined using recombinant enzymes. Fut9 exhibited very strong activity for oligosaccharide acceptors and glycolipid acceptors, that is, more than 10- and 100-fold, respectively, than that of Fut4. Furthermore, both cerebrum and cerebellum at various stages of development (E17, P0, P7, P30, P100) expressed 15-100 times more Fut9 transcript than Fut4 transcript. Neurons and astrocytes in primary culture also expressed 10-15 times more Fut9 than Fut4 transcript. Moreover, alpha1,3-Fut activity toward a polylactosamine chain in homogenates of brain tissues and primary cultured cells showed a pattern typical of Fut9, not Fut4. The developmental profile of activity for the synthesis of Le(x) was well correlated with that of Fut9 transcript. Immunohistochemistry with anti-Fut9 monoclonal antibody revealed the distribution of the Le(x) structure. These results showed that Fut9 is the most responsible enzyme for the synthesis of Le(x) in brain.