Single-cell transcriptome atlas of lung adenocarcinoma featured with ground glass nodules
CELL DISCOVERY
Authors: Lu, Tao; Yang, Xiaodong; Shi, Yu; Zhao, Mengnan; Bi, Guoshu; Liang, Jiaqi; Chen, Zhencong; Huang, Yiwei; Jiang, Wei; Lin, Zongwu; Xi, Junjie; Wang, Shuai; Yang, Yong; Zhan, Cheng; Wang, Qun; Tan, Lijie
Abstract
As an early type of lung adenocarcinoma, ground glass nodule (GGN) has been detected increasingly and now accounts for most lung cancer outpatients. GGN has a satisfactory prognosis and its characteristics are quite different from solid adenocarcinoma (SADC). We compared the GGN adenocarcinoma (GGN-ADC) with SADC using the single-cell RNA sequencing (scRNA-seq) to fully understand GGNs. The tumor samples of five patients with lung GGN-ADCs and five with SADCs underwent surgery were digested to a single-cell suspension and analyzed using 10x Genomic scRNA-seq techniques. We obtained 60,459 cells and then classified them as eight cell types, including cancer cells, endothelial cells, fibroblasts, T cells, B cells, Nature killer cells, mast cells, and myeloid cells. We provided a comprehensive description of the cancer cells and stromal cells. We found that the signaling pathways related to cell proliferation were downregulated in GGN-ADC cancer cells, and stromal cells had different effects in GGN-ADC and SADC based on the analyses of scRNA-seq results. In GGN-ADC, the signaling pathways of angiogenesis were downregulated, fibroblasts expressed low levels of some collagens, and immune cells were more activated. Furthermore, we used flow cytometry to isolate the cancer cells and T cells in 12 GGN-ADC samples and in an equal number of SADC samples, including CD4(+)T and CD8(+)T cells, and validated the expression of key molecules by quantitative real-time polymerase chain reaction analyses. Through comprehensive analyses of cell phenotypes in GGNs, we provide deep insights into lung carcinogenesis that will be beneficial in lung cancer prevention and therapy.
Enhancing care for people living with HIV: current and future monitoring approaches
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY
Authors: Maggiolo, Franco; Bandera, Alessandra; Bonora, Stefano; Borderi, Marco; Calcagno, Andrea; Cattelan, Annamaria; Cingolani, Antonella; Gianotti, Nicola; Lichtner, Miriam; Lo Caputo, Sergio; Madeddu, Giordano; Maggi, Paolo; Marchetti, Giulia Carla; Maserati, Renato; Nozza, Silvia; Rusconi, Stefano; Zazzi, Maurizio; Di Biagio, Antonio
Abstract
Introduction Antiretroviral therapy (ART) is the most significant advance in the medical management of HIV-1 infection. Given the fact that HIV cannot be eradicated from the body, ART has to be indefinitely maintained. New approaches need to be defined for monitoring HIV-infected individuals (PLWHIV), including clinical, virologic, immunological parameters and also ways to collect individual points of view and quality of life. Areas covered We discuss which tests may be used to improve the management of PLWHIV and respond to a comprehensive health demand. Expert opinion Viral load and CD4 counts are well-validated outcome measures and we still need them, but they do not completely depict the health status of PLWHIV. We need to better understand and to apply to clinical practice what happens in sanctuaries, what is the role of HIV DNA, what is the meaning of low-level viremia. Most of these questions do not yet have a definitive response. Further, we need to understand how to modify these variables in order to improve outcomes. Similar points may be raised for immunological measures and for tests exploring the tolerability of drugs. The goal must be the evolution from a viro/immunologic-based to a comprehensive quality-of-health-based evaluation of PLWHIV.