Highly multiplexed proteomic assessment of human bone marrow in acute myeloid leukemia
BLOOD ADVANCES
Authors: Celik, Haydar; Lindblad, Katherine E.; Popescu, Bogdan; Gui, Gege; Goswami, Meghali; Valdez, Janet; DeStefano, Christin; Lai, Catherine; Thompson, Julie; Ghannam, Jack Y.; Fantoni, Giovanna; Biancotto, Angelique; Candia, Julian; Cheung, Foo; Sukumar, Gauthaman; Dalgard, Clifton L.; Smith, Richard H.; Larochelle, Andre; Dillon, Laura W.; Hourigan, Christopher S.
Abstract
Acute myeloid leukemia (AML) is a genetically heterogeneous disease that is characterized by abnormal clonal proliferation of myeloid progenitor cells found predominantly within the bone marrow (BM) and blood. Recent studies suggest that genetic and phenotypic alterations in the BM microenvironment support leukemogenesis and allow leukemic cells to survive and evade chemotherapy -induced death. However, despite substantial evidence indicating the role of tumor -host interactions in AML pathogenesis, little is known about the complex microenvironment of the BM. To address this, we performed novel proteomic profiling of the noncellular compartment of the BM microenvironment in patients with AML (n - 10) and age- and sex -matched healthy control subjects (n = 10) using an aptamer-based, highly multiplexed, affinity proteomics platform (SOMAscan). We show that proteomic assessment of blood or RNA-sequencing of BM are suboptimal alternate screening strategies to determine the true proteomic composition of the extracellular soluble compartment of AML patient BM. Proteomic analysis revealed that 168 proteins significantly differed in abundance, with 91 upregulated and 77 downregulated in leukemic BM. A highly connected signaling network of cytokines and chemokines, including IL-8, was found to be the most prominent proteomic signature associated with AML in the BM microenvironment. We report the first description of significantly elevated levels of the myelosuppressive chemokine CCL23 (myeloid progenitor inhibitory factor-1) in both AML and myelodysplastic syndrome patients and perform functional experiments supportive of a role in the suppression of normal hematopoiesis. This unique paired RNA-sequencing and proteomics data set provides innovative mechanistic insights into AML and healthy aging and should serve as a useful public resource.
Human Eosinophils Produce and Release a Novel Chemokine, CCL23, in vitro
INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY
Authors: Matsumoto, Kenji; Fukuda, Shuhei; Hashimoto, Noriko; Saito, Hirohisa
Abstract
Background: CCL23 (MPIF1/CK-BETA-8) is a novel CC chemokine that plays important roles in the inhibition of myeloid progenitor cell development, the selective recruitment of resting T lymphocytes and monocytes, and the potentiation of VEGF-induced proliferation and migration of human endothelial cells. Since eosinophils participate in the pathogenesis of airway remodeling, we examined CCL23 production and release by human eosinophils in vitro. Methods: Using Ficoll and antibody-coated immunomagnetic beads, eosinophils and other blood cells were purified from peripheral blood samples obtained from normal subjects and mildly allergic patients. Eosinophils were cultured in the presence of 10 ng/ml granulocyte-macrophage colony-stimulating factor (GM-CSF), 10 ng/ml IL-5, 100 ng/ml IFN-gamma, 100 ng/ ml IFN-alpha, or immobilized secretory IgA (sIgA). Total mRNA was extracted after 6 h of culture, and mRNA expression was measured using a microarray and RT-PCR. The CCL23 concentrations in the supernatants and cell lysates after 24 and 48 h of culture were measured by ELISA. Results: CCL23 mRNAs (both CK-beta 8-1 and CK-beta 8) were constitutively expressed in fresh eosinophils, and their expression levels were higher than in other types of blood cells. CCL23 mRNAs were significantly increased by stimulation with GM-CSF and IL-5 and slightly by IFN-alpha and immobilized sIgA. Fresh eosinophils contained trace amounts of CCL23 protein. CCL23 was significantly released into the supernatant when the eosinophils were stimulated with GM-CSF or IL-5 but not with IFN-gamma or immobilized sIgA. Conclusion: Our data suggest that eosinophils produce and release CCL23 and may be involved in some in vivo physiological and pathological conditions. Copyright (C) 2011 S. Karger AG, Basel