Identification of Novel ARSA Mutations in Chinese Patients with Metachromatic Leukodystrophy
INTERNATIONAL JOURNAL OF GENOMICS
Authors: Chen, Li; Yan, Huifang; Cao, Binbin; Wu, Ye; Gu, Qiang; Xiao, Jiangxi; Yang, Yanling; Yang, Huixia; Shi, Zhen; Yang, Zhixian; Pan, Hong; Chang, Xingzhi; Chen, Junya; Sun, Yu; Zhang, Yuehua; Wu, Xiru; Jiang, Yuwu; Wang, Jingmin
Abstract
Objective. Metachromatic leukodystrophy (MLD) is an inherited disease caused by a deficiency of the enzyme arylsulfatase A (ARSA) that leads to severe physiologic and developmental problems. Our study is aimed at elucidating the clinical and genetic characteristics of Chinese MLD patients. Methods. Clinical data of 21 MLD patients was collected. All coding exons of ARSA and their flanking intronic sequences were amplified by polymerase chain reaction and subjected to direct sequencing. Results. All 21 patients were diagnosed with MLD clinically and genetically, out of which 17 patients were late infantile and 4 were juvenile types. A total of 34 ARSA mutations, including 28 novel mutations (22 missense, 1 splicing, 1 nonsense, 3 small insertions, and 1 small deletion mutation) and 6 known mutations (5 missense and 1 small insertion mutation), were identified. Prenatal diagnosis was performed for four pedigrees. One fetus was a patient, two fetuses were carriers, and two were wild type. Conclusions. The present study discovered 28 novel ARSA mutations and widely expanded the mutation spectrum of ARSA. Four successful prenatal diagnoses provided critical information for MLD families.
Flavobacterium koreense sp nov., Flavobacterium chungnamense sp nov., and Flavobacterium cheonanense sp nov., Isolated from a Freshwater Reservoir
JOURNAL OF MICROBIOLOGY
Authors: Lee, Siwon; Weon, Hang-Yeon; Kim, Soo-Jin; Ahn, Tae-Young
Abstract
Taxonomic studies were performed on three strains isolated from Cheonho reservoir in Cheonan, Korea. The isolates were Gram-negative, aerobic, rod-shaped, non-motile, catalase-positive, and oxidase-positive. Colonies on solid media were cream-yellow, smooth, shiny, and circular. Phylogenetic analysis of the 16S rRNA gene sequences revealed that these strains belong to the genus Flavobacterium. The strains shared 98.6-99.4% sequence similarity with each other and showed less than 97% similarity with members of the genus Flavobacterium with validly published names. The DNA-DNA hybridization results confirmed the separate genomic status of strains ARSA-42(T), ARSA-103(T), and ARSA-108(T). The isolates contained menaquinone-6 as the predominant menaquinone and iso-C-15:0, iso-C-15:0 3-OH, iso-C-15:1 G, and iso-C-16:0 3-OH as the major fatty acids. The genomic DNA G+C content of the isolates were 31.4-33.2 mol%. According to the phenotypic and genotypic data, these organisms are classified as representative of three novel species in the genus Flavobacterium, and the name Flavobacterium koreense sp. nov. (strain ARSA-42(T) =KCTC 23182(T) =JCM 17066(T) =KACC 14969(T)), Flavobacterium chungnamense sp. nov. (strain ARSA-103(T), =KCTC 23183(T) =JCM 17068(T) =KACC 14971(T)), and Flavobacterium cheonanense sp. nov. (strain ARSA-108(T) =KCTC 23184(T) =JCM 17069(T) =KACC 14972(T)) are proposed.