Short communication: Confirmation of candidate causative variants on milk composition and cheesemaking properties in Montbeliarde cows
JOURNAL OF DAIRY SCIENCE
Authors: Sanchez, M. P.; Wolf, V; El Jabri, M.; Beuvier, E.; Rolet-Repecaud, O.; Gauzere, Y.; Minery, S.; Brochard, M.; Michenet, A.; Taussat, S.; Barbat-Leterrier, A.; Delacroix-Buchet, A.; Laithier, C.; Fritz, S.; Boichard, D.
Abstract
In a previous study, we identified candidate causative variants located in 24 functional candidate genes for milk protein and fatty acid composition in Montbeliarde, Normande, and Holstein cows. We designed these variants on the custom part of the EuroG10K BeadChip (Illumina Inc., San Diego, CA), which is routinely used for genomic selection analyses in French dairy cattle. To validate the effects of these candidate variants on milk composition and to estimate their effects on cheesemaking properties, a genome-wide association study was performed on milk protein, fatty acid and mineral composition, as well as on 9 cheesemaking traits (3 laboratory cheese yields, 5 coagulation traits, and milk pH). All the traits were predicted from midinfrared spectra in the Montbeliarde cow population of the Franche-Comte region. A total of 194 candidate variants located in 24 genes and 17 genomic regions were imputed on 19,862 cows with phenotypes and genotyped with either the BovineSNP50 (Illumina Inc.) or the EuroG10K BeadChip. We then tested the effect of each SNP in a mixed linear model including random polygenic effects estimated with a genomic relationship matrix. We confirm here the effects of candidate causative variants located in 17 functional candidate genes on both cheesemaking properties and milk composition traits. In each candidate gene, we identified the most plausible causative variant: 4 are missense in the ALPL, SLC26A4, CSN3, and SCD genes, 7 are located in 5' UTR (AGPAT6), 3' untranslated region (GPT), or upstream (CSN1S1, CSN1S2, PAEP, DGAT1, and PICALM) regions, and 6 are located in introns of the SLC37A1, MGST1, CSN2, BRI3BP, FASN, and ANKH genes.
Otological aspects and surgical outcome in a consanguineous family with a novel ANKH gene mutation
INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY
Authors: Thomeer, H. G. X. M.; Morava, E.; Verbist, B. M.; Cremers, C. W. R. J.
Abstract
Objectives: To report the hearing impairment in a new autosomal recessive metabolic disorder due to a mutation in the ANKH gene and to report the outcomes of exploratory tympanotomy. Study design: Retrospective chart study. Setting: Tertiary referral center. Patients: One large consanguineous family was examined. Three patients underwent exploratory tympanotomy. Intervention: Exploratory tympanotomies in three patients. Main outcome measures: Medical and otological histories; postoperative hearing outcomes. Results: In the patients who received tympanotomies, a postoperative hearing gain of between 5 and 20 dB was noted, with a residual air-bone gap of between 6 and 35 dB (follow-up between 4 and 67 months). The sensorineural component of the hearing impairment varies greatly, between 4 and 23 dB, and this factor might also affect the final hearing outcome. Conclusions: Exploratory tympanotomy might improve the hearing outcome in patients with this syndrome and therefore surgery has a limited audiometric benefit in general. Based on anatomical findings, a congenital origin for the ossicular chain anomaly seems likely. It remains unclear whether the sensorineural component of the hearing impairment is progressive and this should be investigated further. (C) 2013 Elsevier Ireland Ltd. All rights reserved.