DNA repair by Rad52 liquid droplets
NATURE COMMUNICATIONS
Authors: Oshidari, Roxanne; Huang, Richard; Medghalchi, Maryam; Tse, Elizabeth Y. W.; Ashgriz, Nasser; Lee, Hyun O.; Wyatt, Haley; Mekhail, Karim
Abstract
Cellular processes are influenced by liquid phase separation, but its role in DNA repair is unclear. Here, we show that in Saccharomyces cerevisiae, liquid droplets made up of DNA repair proteins cooperate with different types of DNA damage-inducible intranuclear microtubule filaments (DIMs) to promote the clustering of DNA damage sites and maintain genome stability. Rad52 DNA repair proteins at different DNA damage sites assemble in liquid droplets that fuse into a repair centre droplet via the action of petite DIMs (pti-DIMs). This larger droplet concentrates tubulin and projects short aster-like DIMs (aster-DIMs), which tether the repair centre to longer DIMs mediating the mobilization of damaged DNA to the nuclear periphery for repair. Our findings indicate that cooperation between Rad52 liquid droplets and various types of nuclear filaments promotes the assembly and function of the DNA repair centre. Genome dynamics allow cells to repair DNA double-strand breaks (DSBs), which are highly toxic DNA lesions. Here the authors reveal that in S. cerevisiae, Rad52 DNA repair proteins assemble in liquid droplets that work with dynamic nuclear microtubules to relocalize lesions to the nuclear periphery for repair.
Maf1-dependent transcriptional regulation of tRNAs prevents genomic instability and is associated with extended lifespan
AGING CELL
Authors: Shetty, Mihir; Noguchi, Chiaki; Wilson, Sydney; Martinez, Esteban; Shiozaki, Kazuhiro; Sell, Christian; Mell, Joshua Chang; Noguchi, Eishi
Abstract
Maf1 is the master repressor of RNA polymerase III responsible for transcription of tRNAs and 5S rRNAs. Maf1 is negatively regulated via phosphorylation by the mTOR pathway, which governs protein synthesis, growth control, and lifespan regulation in response to nutrient availability. Inhibiting the mTOR pathway extends lifespan in various organisms. However, the downstream effectors for the regulation of cell homeostasis that are critical to lifespan extension remain elusive. Here we show that fission yeast Maf1 is required for lifespan extension. Maf1's function in tRNA repression is inhibited by mTOR-dependent phosphorylation, whereas Maf1 is activated via dephosphorylation by protein phosphatase complexes, PP4 and PP2A. Mutational analysis reveals that Maf1 phosphorylation status influences lifespan, which is correlated with elevated tRNA and protein synthesis levels in maf1 increment cells. However, mTOR downregulation, which negates protein synthesis, fails to rescue the short lifespan of maf1 increment cells, suggesting that elevated protein synthesis is not a cause of lifespan shortening in maf1 increment cells. Interestingly, maf1 increment cells accumulate DNA damage represented by formation of Rad52 DNA damage foci and Rad52 recruitment at tRNA genes. Loss of the Rad52 DNA repair protein further exacerbates the shortened lifespan of maf1 increment cells. Strikingly, PP4 deletion alleviates DNA damage and rescues the short lifespan of maf1 increment cells even though tRNA synthesis is increased in this condition, suggesting that elevated DNA damage is the major cause of lifespan shortening in maf1 increment cells. We propose that Maf1-dependent inhibition of tRNA synthesis controls fission yeast lifespan by preventing genomic instability that arises at tRNA genes.