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DNA/RNA Methylation Antibodies

Nowadays, at least 17 and 160 types of chemical modifications have been discovered in DNA and RNA, respectively. Among the known RNA modifications, more than 70 contain methyl groups, so the importance of methylation modification is obvious. Analysis of nucleic acid methylation and their functional effects are critical to epigenetics researchers. Methylation profiles of epigenome are used for disease identification and for research and therapeutic development. Specifically, the detection of methylation in DNA and RNA is essential for the diagnosis and treatment of a wide range of tumor diseases.

Diversity Methylation in DNA/RNA

Partial DNA methylation

StructureNameDescription
5mc5mc5-methylcytosine (5mc) is a major form of DNA modification in the mammalian genome. It is also called the "fifth base". The reaction is catalyzed by DNA methyltransferases (DNMTs) and mostly found in the context of symmetrical CpG dinucleotides.
5hmC5hmC5-hydroxymethylcytosine (5hmC) in mammalian genome is now widely accepted as the "sixth base". The ten-eleven translocation 1 (TET1) enzyme catalyses the conversion of 5Mc to 5hmC.
5fc5fc5-formylcytosine (5fc) might be considered as the "seventh base" of the genome. This nucleotide has been implicated in active demethylation mediated by the base excision repair enzyme thymine DNA glycosylase (TDG).
5caC5caC5-carboxylcytosine (5caC) is the final oxidized derivative of 5-methylcytosine (5Mc). Further successive oxidations mediated by TET result in formation of 5caC.
NameShort nameTypical location
2'-O-methyladenosineAmCap1, Cap2
2'-O-methylcytidineCmCap1, Cap2
2'-O-methylguanosineGmCap1, Cap2
2'-O-methyluridineUmCap1, Cap2
N6,2'-O-dimethyladenosinem6AmCap1
N2,N2,7-trimethylguanosinem2,2,7GCap structure (snRNA)
1-methyladenosinem1AInternal
1-methylguanosinem1GInternal
5-methylcytidinem5CInternal
N6-methyladenosinem6AInternal
1-methylinosinem1I
3-methylcytidinem3C
N4-methylcytidinem4C
N6,N6-dimethyladenosinem6,6A

Methylation in Cancer

CpG island DNA methylation plays critical roles in X-chromosome inactivation, imprinting and cancers and it is rare in normal cells and increases with age. Evidence shows that the existence of CpG island promoter hypermethylation of tumour suppressor genes such as p16INK4a in melanoma, SET9 in cervical cancer and p15INK4b in hematologic malignancies. In addition, it was also reported that the tumourigenesis of some cancers is caused by the hypermethylation of one copy of a tumour suppressor gene whereas the other copy is naturally mutated or lost, supporting the role of DNA hypermethylation in driving tumourigenesis.

RNA methylation has impact on tissue development, DNA damage repair, as well as tumour initiation and progression through largely regulating RNA stability. The m6A methyltransferase METTL3 is over-expressed in gastric, colon and liver cancers and promotes cancer cell proliferation via suppressing the tumour suppressor SOCS2. The m5C methyltransferase NSUN2 is over-expressed in breast and colorectal malignancies.

Application of DNA/RNA Methylation Antibodies

Antibodies against nucleic acid modifications have played an important role in the fields of epigenetics and epitranscriptomics. For instance, enrichment of DNA containing 5mC by methylated DNA immunoprecipiatation (MeDIP) has been a widely used technique in epigenetics for decades. Also, antibody-based sequencing technologies has been widely used in transcriptome studies of several RNA modifications, including m6A, m1A, m5C and m7G, etc.

The antibody-based methods are relatively simple, fast, and cost-effective, but rely on highly specific antibodies to recognize methylated DNA/RNA. The key to producing antibodies that can effectively detect RNA modification lies in antigen design and antibody validation. Antibodies against single nucleosides can be generated by coupling them to an immunogenic carrier protein. Generally, A stable covalent coupling of ribonucleosides can be achieved by oxidation of the ribose ring with sodium periodate followed by a reductive condensation of the resulting aldehyde groups to the NH2-group of the lysine side chain.

Creative Diagnostics offers a range of highly validated antibodies for DNA/RNA methylation analysis. These antibodies have been thoroughly validated in many immunological applications. Please check out our highly sensitive and specific antibodies in the product list.

Product performance

DPABB-JX157 Dot blotDPABB-JX168 Dot blotDPABB-JX159 Dot blotDMABB-JX258 Dot blot
Fig. 1 Dot blot analysis of 5-Carboxylcytosine pAb
(Cat. No DPABB-JX157)
Fig. 2 Dot blot analysis of Am pAb
(Cat. No DPABB-JX168)
Fig. 3 Dot blot analysis of 3-mC pAb
(Cat. No DPABB-JX159)
Fig. 4 Dot blot analysis of m6A mAb
(Cat. No DMABB-JX258)
DMABB-JX344 ELISACABT-L1171 IF
Fig. 5 ELISA analysis of 5-caC mAb
(Cat. No DMABB-JX344)
Fig. 6 IF analysis of DARPP-32 in normal rat ciliary epithelium.
(Cat. No CABT-L1171)

References

  1. Zhao LY.; et al. Mapping the epigenetic modifications of DNA and RNA. Protein Cell. 2020 Nov;11(11):792-808.
  2. Mongan NP.; et al. Detection and analysis of RNA methylation. F1000Res. 2019 Apr 26;8:F1000 Faculty Rev-559.
  3. Feederle R, Schepers A. Antibodies specific for nucleic acid modifications. RNA Biol. 2017 Sep 2;14(9):1089-1098.
  4. Ovcharenko A, Rentmeister A. Emerging approaches for detection of methylation sites in RNA. Open Biol. 2018 Sep;8(9):180121.
  5. Dai X.; et al. Methylation multiplicity and its clinical values in cancer. Expert Rev Mol Med. 2021 Mar 31;23:e2.
DNA/RNA Methylation Antibodies (Search by target)

5-methylcytosine (5-mC)

Anti-5-methylcytosine (5-mC) Antibodies
Cat. No.Product NameApplication
DMABB-JX274Rabbit Anti-5-methylcytosine (5-mC) monoclonal antibody, clone SN342ELISA, Dot, ICC, FCInquiry
DMABT-H21873Mouse Anti-5-Methylcytosine monoclonal antibody, clone 44E4Dot, IF, SB, ICC, IHC-P, FCInquiry
CABT-B354Sheep Anti-5-Methylcytosine polyclonal antibodyDot, FC, ICC/IF, IHC, IP, WBInquiry

Methylcytidine (Cm)

Anti-Methylcytidine (Cm) Antibodies
Cat. No.Product NameApplication
DMABB-JX352Rabbit Anti-2'-O-methylcytidine/Cm monoclonal antibody, clone BSD61740ELISA, DotInquiry
DPABB-JX167Rabbit Anti-2'-O-methylcytidine/Cm polyclonal antibodyELISA, DotInquiry

5-Hydroxymethylcytosine (5-hmC)

Anti-5-Hydroxymethylcytosine (5-hmC) Antibodies
Cat. No.Product NameApplication
CABT-L1171Rabbit Anti-5-Hydroxymethylcytosine monoclonal antibody, clone SN347ELISA, ICC, IHC, IP, IFInquiry
DMABB-JX232Mouse Anti-5-Hydroxymethylcytosine monoclonal antibody, clone 5E0ELISA, DotInquiry
DMABT-H21877Rat Anti-5-hydroxymethylcytosine monoclonal antibody, clone BC4/74.4Dot, ICCInquiry
CABT-L6445ZRabbit Anti-5-hydroxymethylcytidine polyclonal antibodyIP, ICC/IF, IHC, WB, Dot, ELISAInquiry

Methylguanosine (Gm)

5-Formylcytosines (5-fC)

Anti-5-Formylcytosines (5-fC) Antibodies
Cat. No.Product NameApplication
DMABB-JX273Rabbit Anti-5-Formylcytosines (5-fC) monoclonal antibody, clone SN588DotInquiry
DPABB-JX158Rabbit Anti-5-Formylcytosine (5-fC) polyclonal antibodyWB, IF/ICC, DBInquiry

Methyluridine (Um)

Anti-Methyluridine (Um) Antibodies
Cat. No.Product NameApplication
DMABB-JX351Rabbit Anti-2'-O-methyluridine(Um) monoclonal antibody, clone BSD61861 ELISA, DotInquiry
DPABB-JX166Rabbit Anti-2'-O-methyluridine(Um) polyclonal antibodyELISA, DotInquiry

5-Carboxylcytosine (5-caC)

Anti-5-Carboxylcytosine (5-caC) Antibodies
Cat. No.Product NameApplication
DMABB-JX344Rabbit Anti-5-Carboxylcytosine (5-caC) Monoclonal Antibody, clone SN572Dot, ELISAInquiry
DPABB-JX157Rabbit Anti-5-Carboxylcytosine (5-caC) polyclonal antibodyDot, IF/ICCInquiry

3-Methylcytosine (3-mC)

Anti-3-Methylcytosine (3-mC) Antibodies
Cat. No.Product NameApplication
DPABB-JX159Rabbit Anti-3-Methylcytosine (3-mC) polyclonal antibodyDotInquiry

N6N6-dimethyladenosine (m66A)

Anti-N6N6-dimethyladenosine (m66A) Antibodies
Cat. No.Product NameApplication
DPABB-JX04Rabbit Anti-N6N6-dimethyladenosine polyclonal antibodyDot, RIPInquiry

1-methylinosine (m1I)

Anti-1-methylinosine (m1I) Antibodies
Cat. No.Product NameApplication
DPABB-JX03Rabbit Anti-1-methylinosine polyclonal antibodyDotInquiry

N6,2'-O-dimethyladenosine (m6Am)

Anti-N6,2'-O-dimethyladenosine (m6Am) Antibodies
Cat. No.Product NameApplication
DPABB-JX164Rabbit Anti-N6,2'-O-dimethyladenosine/m6Am polyclonal antibodyELISA, DotInquiry

Methyladenosine (Am)

Anti- Methyladenosine (Am) Antibodies
Cat. No.Product NameApplication
DPABB-JX168Rabbit Anti-2'-O-methyladenosine/Am polyclonal antibodyELISA, DotInquiry

N4-Methylcytidine (m4C)

Anti-N4-Methylcytidine (m4C) Antibodies
Cat. No.Product NameApplication
DPABB-JX163Rabbit Anti-N4-Methylcytidine polyclonal antibodyELISA, WBInquiry
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