Molecular diversity of tobacco vein banding mosaic virus
ARCHIVES OF VIROLOGY
Authors: Tian, Y.-P.; Liu, J.-L.; Yu, X.-Q.; Lei, L.-P.; Zhu, X.-P.; Valkonen, J. P. T.; Li, X.-D.
Abstract
Tobacco vein banding mosaic virus (TVBMV) is of increasing importance in tobacco production on the Chinese mainland. The 3'-terminal genomic sequences (1624 nucleotides) of 12 TVBMV isolates from China were determined and compared to the sequences of only four TVBMV isolates available in databanks. The results revealed that TVBMV consists of several phylogenetically distinguishable strains that show a degree of correlation with the geographical origin. Two isolates from Yunnan had a unique putative NIb/CP proteolytic cleavage site of Q/N that is uncommon for potyviruses, whereas other TVBMV isolates had the more typical Q/G amino acids at that site. One isolate (ZB6) from Zibo, Shandong Province, was predicted to have experienced recombination within the characterized genomic region.
A multiplex reverse transcription PCR assay for simultaneous detection of five tobacco viruses in tobacco plants
JOURNAL OF VIROLOGICAL METHODS
Authors: Dai, Jin; Cheng, Julong; Huang, Ting; Zheng, Xuan; Wu, Yunfeng
Abstract
Tobacco viruses including Tobacco mosaic virus (TMV), Cucumber mosaic virus (CMV), Tobacco etch virus (TEV), Potato virus Y (PVY) and Tobacco vein banding mosaic virus (TVBMV) are major viruses infecting tobacco and can cause serious crop losses. A multiplex reverse transcription polymerase chain reaction assay was developed to detect simultaneously and differentiate all five viruses. The system used specific primer sets for each virus producing five distinct fragments 237, 273, 347, 456 and 547 bp, representing TMV, CMV subgroup 1, TEV, PVY0 and TVBMV, respectively. These primers were used for detection of the different viruses by single PCR and multiplex PCR and the results were confirmed by DNA sequencing analysis. The protocol was used to detect viruses from different parts of China. The simultaneous and sensitive detection of different viruses using the multiplex PCR is more efficient and economical than other conventional methods for tobacco virus detection. This multiplex PCR provides a rapid and reliable method for the detection and identification of major tobacco viruses, and will be useful for epidemiological studies. (C) 2012 Elsevier B.V. All rights reserved.