Both thyroid hormone ( T 3) and growth hormone (GH) are important regulators of somatic growth in birds and mammals. Although T-3-mediated gene transcription is well known, the molecular basis of T 3 interaction with GH on growth and development of birds remains unknown. In earlier studies, we discovered that exogenous GH alone increased accumulation of visceral fat in young chickens, while the combination of GH injections and dietary T 3 worked synergistically to deplete body fat. In the present study, cDNA microarray and quantitative RT-PCR analyses enabled us to examine hepatic gene expression in young chickens after chronic manipulation of thyroid status and GH injection alone or in combination with T-3. Thyroid status modulates expression of common and unique sets of genes involved in a wide range of molecular functions (i.e., energy metabolism, storage and transport, signal transduction, protein turnover and drug detoxification). Hepatic expression of 35 genes was altered by hypothyroidism ( e. g., ADFP, ANGPTL3, GSTA, CAT, PPARG, HMGCL, GHR, IGF1, STAT3, THRSP alpha), whereas hyperthyroidism affected expression of another cluster of 13 genes ( e. g., IGFBP1, KHK, LDHB, BAIA2L1, SULT1B, TRIAD3). Several genes were identified which have not been previously ascribed as T 3 responsive ( e. g., DEFB9, EPS8L2, ARHGAP1, LASS2, INHBC). Exogenous GH altered expression of 17 genes ( e. g., CCAR1, CYP2C45, GYS2, ENOB, HK1, FABP1, SQLE, SOCS2, UPG2). The T-3+GH treatment depleted the greatest amount of body fat, where 34 differentially expressed genes were unique to this group ( e. g., C/EBP, CDC42EP1, SYDE2, PCK2, PIK4CA, TH1L, GPT2, BHMT). The marked reduction in body fat brought about by the T-3+GH synergism could involve modulation of hormone signaling via altered activity of the Ras superfamily of molecular switches, which control diverse biological processes. In conclusion, this study provides the first global analysis of endocrine ( T 3 and GH) regulation of hepatic gene transcription in the chicken. Copyright (c) 2007 S. Karger AG, Basel