Basic surface features of nuclear FKBPs facilitate chromatin binding
SCIENTIFIC REPORTS
Authors: Leung, Andrew; Jardim, Francy-Pesek; Savic, Neda; Monneau, Yoan R.; Gonzalez-Romero, Rodrigo; Gudavicius, Geoff; Eirin-Lopez, Jose M.; Bartke, Till; Mackereth, Cameron D.; Ausio, Juan; Nelson, Christopher J.
Abstract
The nucleoplasmin family of histone chaperones is identified by a pentamer-forming domain and multiple acidic tracts that mediate histone binding and chaperone activity. Within this family, a novel domain organization was recently discovered that consists of an N-terminal nucleoplasmin-like (NPL) domain and a C-terminal FKBP peptidyl-proline isomerase domain. Saccharomyces cerevisiae Fpr4 is one such protein. Here we report that in addition to its known histone prolyl isomerase activities, the Fpr4 FKBP domain binds to nucleosomes and nucleosome arrays in vitro. This ability is mediated by a collection of basic patches that enable the enzyme to stably associate with linker DNA. The interaction of the Fpr4 FKBP with recombinant chromatin complexes condenses nucleosome arrays independently of its catalytic activity. Based on phylogenetic comparisons we propose that the chromatin binding ability of 'basic' FKBPs is shared amongst related orthologues present in fungi, plants, and insects. Thus, a subclass of FKBP prolyl isomerase enzymes is recruited to linker regions of chromatin.
Re-estimation of argon isotope ratios leading to a revised estimate of the Boltzmann constant
METROLOGIA
Authors: de Podesta, Michael; Mark, Darren F.; Dymock, Ross C.; Underwood, Robin; Bacquart, Thomas; Sutton, Gavin; Davidson, Stuart; Machin, Graham
Abstract
In 2013, NPL, SUERC and Cranfield University published an estimate for the Boltzmann constant (de Podesta et al 2013 Metrologia 50 354-76) based on a measurement of the limiting low-pressure speed of sound in argon gas. Subsequently, an extensive investigation by Yang et al (2015 Metrologia 52 S394-409) revealed that there was likely to have been an error in the estimate of the molar mass of the argon used in the experiment. Responding to Yang et al (2015 Metrologia 52 S394-409), de Podesta et al revised their estimate of the molar mass (de Podesta et al 2015 Metrologia 52 S353-63). The shift in the estimated molar mass, and of the estimate of kB, was large: -2.7 parts in 10(6), nearly four times the original uncertainty estimate. The work described here was undertaken to understand the cause of this shift and our conclusion is that the original samples were probably contaminated with argon from atmospheric air. In this work we have repeated the measurement reported in de Podesta et al (2013 Metrologia 50 354-76) on the same gas sample that was examined in Yang et al (2015 Metrologia 52 S394-409) and de Podesta et al (2015 Metrologia 52 S353-63). However in this work we have used a different technique for sampling the gas that has allowed us to eliminate the possibility of contamination of the argon samples. We have repeated the sampling procedure three times, and examined samples on two mass spectrometers. This procedure confirms the isotopic ratio estimates of Yang et al (2015 Metrologia 52 S394-409) but with lower uncertainty, particularly in the relative abundance ratio R-38:36. Our new estimate of the molar mass of the argon used in Isotherm 5 in de Podesta et al (2013 Metrologia 50 354-76) is 39.947 727(15) g mol(-1) which differs by +0.50 parts in 106 from the estimate 39.947 707(28) g mol-1 made in de Podesta et al (2015 Metrologia 52 S353-63). This new estimate of the molar mass leads to a revised estimate of the Boltzmann constant of k(B) = 1.380 648 60 (97) x 10(-23) J K-1 which differs from the 2014 CODATA value by +0.05 parts in 10(6).