Region of Interest analysis using mass spectrometry imaging of mitochondrial and sarcomeric proteins in acute cardiac infarction tissue
SCIENTIFIC REPORTS
Authors: Yajima, Yuka; Hiratsuka, Takuya; Kakimoto, Yu; Ogawa, Shuichiro; Shima, Keisuke; Yamazaki, Yuzo; Yoshikawa, Kenichi; Tamaki, Keiji; Tsuruyama, Tatsuaki
Abstract
Matrix-assisted laser desorption ionization image mass spectrometry (MALDI-IMS) has been developed for the identification of peptides in various tissues. The MALDI-IMS signal distribution patterns and quantification of the signal intensities of the regions of interest (ROI) with healthy regions were compared for identification of the disease specific biomarkers. We performed a new ROI analysis using the conventional t-test and data number independent Cohen's d-value analysis. Using these techniques, we analysed heart tissues after acute myocardial infarction (AMI). As a result, IMS signals of mitochondrial adenosine triphosphate synthase alpha subunit (ATP5A), myosin-6/7(MYH6/7), aortic actin, and the myosin light chain 3 (MYL3) were identified in the infarcted region. In particular, the signals of MYH7 are significantly greater in the infarcted region using ROI analysis. ROI analysis using MALDI-IMS may be a promising technique for the identification of biomarkers for pathological studies that involve the comparison of diseased and control areas.
CLONING OF A PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED PEPTIDE RECEPTOR (PTHR) CDNA FROM A RAT OSTEOSARCOMA (UMR-106) CELL-LINE - CHROMOSOMAL ASSIGNMENT OF THE GENE IN THE HUMAN, MOUSE, AND RAT GENOMES
GENOMICS
Authors: PAUSOVA, Z; BOURDON, J; CLAYTON, D; MATTEI, MG; SELDIN, MF; JANICIC, N; RIVIERE, M; SZPIRER, J; LEVAN, G; SZPIRER, C; GOLTZMAN, D; HENDY, GN
Abstract
Complementary DNAs spanning the entire coding region of the rat parathyroid hormone/parathyroid hermone-related peptide receptor (PTHR) were isolated from a rat osteosarcoma (UMR 106) cell-line cDNA iibrary. The longest of these clones (rPTHrec4) was used to chromosomally assign the PTHR gene in the human, rat, and mouse genomes. By somatic cell hybrid analysis, the gene was localized to human chromosome 3 and rat chromosome 8; by in situ hybridization, the gene was mapped to human chromosome 3p21.1-p22 and to mouse chromosome 9 band F; and by interspecific backcross analysis, the Pthr gene segregated with the transferrin (Trf) gene in chromosome 9 band F. Mouse chromosome 9 and rat chromosome 8 are known to be highly homologous and to also show synteny conservation with human chromosome 3. These three chromosomes share the transferrin gene (TF), the myosin light polypeptide 3 gene (MYL3), and the acylpeptide hydrolase gene (APEH). Our results add a fourth gene, the PTHR gene, to the synteny group conserved in these chromosomes. (C) 1994 Academic Press, Inc.