Molecular detection of mutations in isolates of multidrug resistant tuberculosis and tuberculosis suspects by multiplex allele specific PCR
PAKISTAN JOURNAL OF PHARMACEUTICAL SCIENCES
Authors: Hameed, Salma; Mahmood, Nasir; Chaudhry, Muhammad Nawaz; Ahmad, Sajid Rashid; Aqeel-ur-Rahman, Mohammad
Abstract
For lowering prevalence of drug resistance it is necessary to diagnose TB in tuberculosis sputum suspect patients instead of TB-cultured samples which required a long time of culturing. Comparison of the results of drug resistant bacterial genes in both tuberculosis suspect sputum and multi-drug resistant DNA isolates detected by MAS-PCR. In the current study, the genetic mutations linked with 1NH, RIF as well as EMB drugs were detected by MAS-PCR simultaneously in MDR as well as TB suspect sputum isolates. 175/291 samples belonged to MDR and 116/291 samples belonged to tuberculosis suspect group. In all the isolates, presence of Mycobacterium tuberculosis-species (100%) was confirmed by targeting hupB gene. In MDR group, maximum prevalence of gene mutation was detected in rpoB531 (92.57%) and embB306 (97.71%) while in TB-suspect group, equal percentage (96.55%) of mutation was detected in rpoB531 and embB306 by MAS-PCR. Collectively, rpoB531 (n=274, 94.15%) and embB306 (n=283, 97.25%) mutation were observed in maximum tuberculosis cases. MAS-PCR technique yielded reliable results and showed massive Isoniazid, Rifampicin and Ethambutol drugs resistance in TB-isolates from Pakistan; hence it can be used in clinical laboratories with high burden of tuberculosis to detect drug resistance rapidly and cost effectively.
Extension of FCM by introducing new distance metric
SN APPLIED SCIENCES
Authors: Kumar, Niteesh; Kumar, Harendra; Sharma, Kuldeep
Abstract
The present article made a significant novel contribution in statistical methodology and dealing with novel and original data analytical clustering algorithm for assigning big data sets into disjoint clusters. The most widely used clustering algorithm is fuzzy c-mean (FCM). But FCM has considerable inconvenience in noisy and outliers data sets because its objective function used Euclidean distance measure for obtaining the communication between data points. It is easily trapped in local optima while the clustering algorithm should be robust and handle these situations. To overcome these problems, this article attempts to generate two distance metrics called advanced metric d(AMA) and extended metric d(EMB) that are free from the noisy environment. Then using these distance metrics, two algorithms, advanced metric fuzzy c-mean and extended metric fuzzy c-mean, have been developed for the modification of FCM to achieve the minimization conditions of objective function. These proposed algorithms are more robust than the existing FCM techniques. The efficiency of proposed clustering algorithm is checked by considering numerous examples from different research papers in terms of fitness value, inter-cluster distance and accuracy. The result shows that the proposed algorithms are more robust than the existing algorithms.