Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells
IMMUNITY
Authors: Dutertre, Charles-Antoine; Becht, Etienne; Irac, Sergio Erdal; Khalilnezhad, Ahad; Narang, Vipin; Khalilnezhad, Shabnam; Ng, Pei Y.; van den Hoogen, Lucas L.; Leong, Jing Yao; Lee, Bernett; Chevrier, Marion; Zhang, Xiao Meng; Yong, Pearly Jean Ai; Koh, Geraldine; Lum, Josephine; Howland, Shanshan Wu; Mok, Esther; Chen, Jinmiao; Larbi, Anis; Tan, Henry Kun Kiaang; Lim, Tony Kiat Hon; Karagianni, Panagiota; Tzioufas, Athanasios G.; Malleret, Benoit; Brody, Joshua; Albani, Salvatore; van Roon, Joel; Radstake, Timothy; Newell, Evan W.; Ginhoux, Florent
Abstract
Human mononuclear phagocytes comprise phenotypically and functionally overlapping subsets of dendritic cells (DCs) and monocytes, but the extent of their heterogeneity and distinct markers for subset identification remains elusive. By integrating high-dimensional single-cell protein and RNA expression data, we identified distinct markers to delineate monocytes from conventional DC2 (cDC2s). Using CD88 and CD89 for monocytes and HLA-DQ and Fc epsilon RI alpha for cDC2s allowed for their specific identification in blood and tissues. We also showed that cDC2s could be subdivided into phenotypically and functionally distinct subsets based on CD5, CD163, and CD14 expression, including a distinct subset of circulating inflammatory CD5(-)CD163(+)CD14(+) cells related to previously defined DC3s. These inflammatory DC3s were expanded in systemic lupus erythematosus patients and correlated with disease activity. These findings further unravel the heterogeneity of DC subpopulations in health and disease and may pave the way for the identification of specific DC subset-targeting therapies.
Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral Therapy
FRONTIERS IN IMMUNOLOGY
Authors: Babu, Hemalatha; Ambikan, Anoop T.; Gabriel, Erin E.; Akusjarvi, Sara Svensson; Palaniappan, Alangudi Natarajan; Sundaraj, Vijila; Mupanni, Naveen Reddy; Sperk, Maike; Cheedarla, Narayanaiah; Sridhar, Rathinam; Tripathy, Srikanth P.; Nowak, Piotr; Hanna, Luke Elizabeth; Neogi, Ujjwal
Abstract
The ART program in low- and middle-income countries (LMIC) like India, follows a public health approach with a standardized regimen for all people living with HIV (PLHIV). Based on the evidence from high-income countries (HIC), the risk of an enhanced, and accentuated onset of premature-aging or age-related diseases has been observed in PLHIV. However, very limited data is available on residual inflammation and immune activation in the populations who are on first-generation anti-HIV drugs like zidovudine and lamivudine that have more toxic side effects. Therefore, the aim of the present study was to evaluate the levels of systemic inflammation and understand the risk of age-associated diseases in PLHIV on long-term suppressive ART using a large number of biomarkers of inflammation and immune activation. Blood samples were obtained from therapy naive PLHIV (Pre-ART, n = 43), PLHIV on ART for >5 years (ART, n = 53), and HIV-negative healthy controls (HIVNC, n = 41). Samples were analyzed for 92 markers of inflammation, sCD14, sCD163, and telomere length. Several statistical tests were performed to compare the groups under study. Multivariate linear regression was used to investigate the associations. Despite a median duration of 8 years of successful ART, sCD14 (p < 0.001) and sCD163 (p = 0.04) levels continued to be significantly elevated in ART group as compared to HIVNC. Eleven inflammatory markers, including 4E-BP1, ADA, CCL23, CD5, CD8A, CST5, MMP1, NT3, SLAMF1, TRAIL, and TRANCE, were found to be significantly different (p < 0.05) between the groups. Many of these markers are associated with age-related co-morbidities including cardiovascular disease, neurocognitive decline and some of these markers are being reported for the first time in the context of HIV-induced inflammation. Linear regression analysis showed a significant negative association between HIV-1-positivity and telomere length (p < 0.0001). In ART-group CXCL1 (p = 0.048) and TGF-alpha (p = 0.026) showed a significant association with the increased telomere length and IL-10RA was significantly associated with decreased telomere length (p = 0.042). This observation warrants further mechanistic studies to generate evidence to highlight the need for enhanced treatment monitoring and special interventions in HIV-infected individuals.